ERDDAP > info > bcodmo_dataset_784927

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[SMURF faunal settlement] - Collections of fish and invertebrates settled in artificial seagrass landscapes (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)		F   I   M	background			BCO-DMO	bcodmo_dataset_784927

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt
attribute	NC_GLOBAL	acquisition_description	String	We measured recruitment of fishes and crabs to artificial and natural seagrass beds in Back Sound, North Carolina from June to August 2018.\u00a0 We sampled 26 artificial seagrass landscapes defined by 18m x 13m landscape extents (234 m2). Within each landscape, we varied habitat amount and fragmentation independently in a crossed design. We created a custom algorithm to generate random landscapes using the randomHabitat function in the secr package in R (Efford 2018, R Core Team 2018). Landscapes were generated along two orthogonal axes of habitat cover (10-60%) and fragmentation using a random modified clusters method (percolation probability = 0.10-0.59 which determines patch number; higher percolation coefficients correspond to less patchiness)(Saura and Martinez-Millan 2000). Landscapes were constrained to fall within 2% of the area input parameter, while holding patch number similar within fragmentation levels (1, 2-3, 4-5, 6-7, or 8-10 patches for each level). Using this approach, we constructed landscapes in which seagrass area and number of patches were uncorrelated (R = -0.02), allowing us to independently assess the effects of seagrass area and habitat configuration on fish communities across experimental study sites. Artificial seagrass units (ASUs) were used to create artificial seagrass landscapes.\u00a0 ASUs were made by tying green plastic ribbon to polyethylene mesh cut into 1.2m x 0.86m rectangles, with ~450, 15 cm tall shoots (with 2 blades each) attached each unit. ASUs were deployed by affixing ASUs in designated configurations to bare sediment using metal lawn staples. These artificial landscapes were deployed between May 23 to May 31, 2018.\u00a0 We compared the artificial seagrass landscapes to natural landscapes in the same area.\u00a0 We sampled 18 haphazardly selected natural seagrass patches that were at least 100 m away from the artificial seagrass landscapes. We used Standardized Monitoring Units for Reef Fishes (SMURFs, Ammann 2004) to measure recruitment of fishes and invertebrates into each landscape.\u00a0 SMURFs used in this study were 60 x 15 x 20 cm in size with an outer shell made from 5 cm x 7.6 cm polyethylene mesh.\u00a0 Each SMURF was filled with crumpled 2.5 x 2.5 cm polyethylene mesh and plastic mesh produce bags ([https://www.amazon.com/dp/B01LWL1YFT/ref=cm_sw_r_cp_api_i_J9TzCbZZ5GKR6](\\"https://www.amazon.com/dp/B01LWL1YFT/ref=cm_sw_r_cp_api_i_J9TzCbZZ5GKR6\\")). For deployment, SMURFs were deployed attached to the bottom at one end, but floated vertically in the water column.\u00a0 SMURFs were deployed for ~24hrs, including overnight, and collected before noon on the following day (pick-up times are included in the data).\u00a0 Upon retrieval, the SMURF was enclosed in a custom made BINKE net (Anderson and Carr 1998) made out of 1.5 mm square nylon netting.\u00a0 The SMURF was brought to the boat within the enclosed BINKE net and placed into a large plastic tub.\u00a0 It was shaken vigorously while being rinsed with buckets of seawater and then the rinse water in the tub was visually inspected for organisms which we collected, placed in a resealable plastic bag, and quickly froze in an ice and seawater slurry. This process was repeated until three successive rinses yielded no new organisms.\u00a0 The water in the tub was passed through a 1 mm mesh sieve to ensure no organisms remained in the tub. All organisms were returned to the lab for processing. Each landscape was sampled on 9 different dates between June and August, representing the major recruitment period for most fishes in this system.
attribute	NC_GLOBAL	awards_0_award_nid	String	714025
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1635950
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1635950
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	Michael E. Sieracki
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50446
attribute	NC_GLOBAL	awards_1_award_nid	String	714031
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-1661683
attribute	NC_GLOBAL	awards_1_data_url	String	https://www.nsf.gov/awardsearch/showAward?AWD_ID=1661683
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	Michael E. Sieracki
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50446
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Smurf settlement PI: Lauren Yeager Data Version 1: 2019-12-23
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2019-12-20T21:38:04Z
attribute	NC_GLOBAL	date_modified	String	2020-02-24T16:59:41Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.784927.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-76.588016
attribute	NC_GLOBAL	geospatial_lat_max	double	34.7067
attribute	NC_GLOBAL	geospatial_lat_min	double	34.70033333
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-76.588016
attribute	NC_GLOBAL	geospatial_lon_min	double	-76.602848
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/784927
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, cover, data, dataset, date, dmo, erddap, fragmentation, Fragmentation_treatment, gear, iso, landscape, Landscape_type, larvae, Larvae_settler, latitude, longitude, management, notes, oceanography, office, percent, Percent_cover_treatment, pick, Pick_up_date, Pick_up_time, PickUp_DateTime_UTC_ISO, preliminary, processed, Processed_by, sample, Sample_ID, settler, site, size, taxa, time, treatment, type
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/784927/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/784927
attribute	NC_GLOBAL	Northernmost_Northing	double	34.7067
attribute	NC_GLOBAL	param_mapping	String	{'784927': {'Latitude': 'flag - latitude', 'PickUp_DateTime_UTC_ISO': 'flag - time', 'Longitude': 'flag - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/784927/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	University of Texas - Marine Science Institute
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	UTMSI
attribute	NC_GLOBAL	people_0_person_name	String	Lauren A. Yeager
attribute	NC_GLOBAL	people_0_person_nid	String	714030
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	University of North Carolina at Chapel Hill
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	UNC-Chapel Hill-IMS
attribute	NC_GLOBAL	people_1_person_name	String	Dr F. Joel Fodrie
attribute	NC_GLOBAL	people_1_person_nid	String	559341
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Karen Soenen
attribute	NC_GLOBAL	people_2_person_nid	String	748773
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	project	String	Habitat Fragmentation
attribute	NC_GLOBAL	projects_0_acronym	String	Habitat Fragmentation
attribute	NC_GLOBAL	projects_0_description	String	Amount and quality of habitat is thought to be of fundamental importance to maintaining coastal marine ecosystems. This research will use large-scale field experiments to help understand how and why fish populations respond to fragmentation of seagrass habitats. The question is complex because increased fragmentation in seagrass beds decreases the amount and also the configuration of the habitat (one patch splits into many, patches become further apart, the amount of edge increases, etc). Previous work by the investigators in natural seagrass meadows provided evidence that fragmentation interacts with amount of habitat to influence the community dynamics of fishes in coastal marine landscapes. Specifically, fragmentation had no effect when the habitat was large, but had a negative effect when habitat was smaller. In this study, the investigators will build artificial seagrass habitat to use in a series of manipulative field experiments at an ambitious scale. The results will provide new, more specific information about how coastal fish community dynamics are affected by changes in overall amount and fragmentation of seagrass habitat, in concert with factors such as disturbance, larval dispersal, and wave energy. The project will support two early-career investigators, inform habitat conservation strategies for coastal management, and provide training opportunities for graduate and undergraduate students. The investigators plan to target students from underrepresented groups for the research opportunities. Building on previous research in seagrass environments, this research will conduct a series of field experiments approach at novel, yet relevant scales, to test how habitat area and fragmentation affect fish diversity and productivity. Specifically, 15 by 15-m seagrass beds will be created using artificial seagrass units (ASUs) that control for within-patch-level (~1-10 m2) factors such as shoot density and length. The investigators will employ ASUs to manipulate total habitat area and the degree of fragmentation within seagrass beds in a temperate estuary in North Carolina. In year one, response of the fishes that colonize these landscapes will be measured as abundance, biomass, community structure, as well as taxonomic and functional diversity. Targeted ASU removals will then follow to determine species-specific responses to habitat disturbance. In year two, the landscape array and sampling regime will be doubled, and half of the landscapes will be seeded with post-larval fish of low dispersal ability to test whether pre- or post-recruitment processes drive landscape-scale patterns. In year three, the role of wave exposure (a natural driver of seagrass fragmentation) in mediating fish community response to landscape configuration will be tested by deploying ASU meadows across low and high energy environments.
attribute	NC_GLOBAL	projects_0_end_date	String	2019-08
attribute	NC_GLOBAL	projects_0_geolocation	String	North Carolina
attribute	NC_GLOBAL	projects_0_name	String	Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms
attribute	NC_GLOBAL	projects_0_project_nid	String	714026
attribute	NC_GLOBAL	projects_0_start_date	String	2016-09
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	34.70033333
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	Gear,Processed_by
attribute	NC_GLOBAL	summary	String	Collections of fish and invertebrates settles in artificial seagrass landscapes collected between June and August 2018
attribute	NC_GLOBAL	time_coverage_start	String	2018-06-07T14:01:00Z
attribute	NC_GLOBAL	title	String	[SMURF faunal settlement] - Collections of fish and invertebrates settled in artificial seagrass landscapes (Collaborative Research: Habitat fragmentation effects on fish diversity at landscape scales: experimental tests of multiple mechanisms)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	-76.602848
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Sample_ID		String
attribute	Sample_ID	bcodmo_name	String	sample
attribute	Sample_ID	description	String	Unique sample identifier: site + date
attribute	Sample_ID	long_name	String	Sample ID
attribute	Sample_ID	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	Sample_ID	units	String	unitless
variable	Landscape_type		String
attribute	Landscape_type	bcodmo_name	String	sample_type
attribute	Landscape_type	description	String	Was the SMURF placed in a natural seagrass bed (natural) or one made of artifical seagrass units (ASU)
attribute	Landscape_type	long_name	String	Landscape Type
attribute	Landscape_type	units	String	unitless
variable	Percent_cover_treatment		float
attribute	Percent_cover_treatment	_FillValue	float	NaN
attribute	Percent_cover_treatment	actual_range	float	10.0, 60.0
attribute	Percent_cover_treatment	bcodmo_name	String	cover_pcent
attribute	Percent_cover_treatment	colorBarMaximum	double	100.0
attribute	Percent_cover_treatment	colorBarMinimum	double	0.0
attribute	Percent_cover_treatment	description	String	Percent cover treatment- area of the landscape covered in artificial seagrass
attribute	Percent_cover_treatment	long_name	String	Percent Cover Treatment
attribute	Percent_cover_treatment	units	String	percentage (%)
variable	Fragmentation_treatment		float
attribute	Fragmentation_treatment	_FillValue	float	NaN
attribute	Fragmentation_treatment	actual_range	float	0.1, 0.59
attribute	Fragmentation_treatment	bcodmo_name	String	treatment
attribute	Fragmentation_treatment	description	String	Fragmentation treatment - percolation coefficient from random landscape generation"
attribute	Fragmentation_treatment	long_name	String	Fragmentation Treatment
attribute	Fragmentation_treatment	units	String	unitless
variable	Site		String
attribute	Site	bcodmo_name	String	site
attribute	Site	description	String	Site name
attribute	Site	long_name	String	Site
attribute	Site	units	String	unitless
variable	Pick_up_date		String
attribute	Pick_up_date	bcodmo_name	String	date
attribute	Pick_up_date	description	String	Date retrieved
attribute	Pick_up_date	long_name	String	Pick Up Date
attribute	Pick_up_date	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	Pick_up_date	units	String	unitless
variable	Pick_up_time		String
attribute	Pick_up_time	bcodmo_name	String	time
attribute	Pick_up_time	description	String	Time retrieved on 24-hour clock in local time (EST)
attribute	Pick_up_time	long_name	String	Pick Up Time
attribute	Pick_up_time	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/
attribute	Pick_up_time	units	String	unitless
variable	Gear		String
attribute	Gear	bcodmo_name	String	sampling_method
attribute	Gear	description	String	Collection gear
attribute	Gear	long_name	String	Gear
attribute	Gear	units	String	unitless
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	34.70033333, 34.7067
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude (South is negative)
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	-76.602848, -76.588016
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Longitude (West is negative)
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	Processed_by		String
attribute	Processed_by	bcodmo_name	String	investigator
attribute	Processed_by	description	String	Intials of person who processed the sample
attribute	Processed_by	long_name	String	Processed By
attribute	Processed_by	units	String	unitless
variable	Taxa		String
attribute	Taxa	bcodmo_name	String	taxon
attribute	Taxa	description	String	Taxa name
attribute	Taxa	long_name	String	Taxa
attribute	Taxa	units	String	unitless
variable	Size		float
attribute	Size	_FillValue	float	NaN
attribute	Size	actual_range	float	1.0, 224.0
attribute	Size	bcodmo_name	String	length
attribute	Size	description	String	Standard length (fish), carapace length (shrimp), or carapace width (crabs)
attribute	Size	long_name	String	Size
attribute	Size	units	String	millimeter (mm)
variable	Larvae_settler		String
attribute	Larvae_settler	bcodmo_name	String	flag
attribute	Larvae_settler	description	String	Was the organism in the larval stage or recently settled? Y = yes, N = no
attribute	Larvae_settler	long_name	String	Larvae Settler
attribute	Larvae_settler	units	String	unitless
variable	N		byte
attribute	N	_FillValue	byte	127
attribute	N	actual_range	byte	0, 48
attribute	N	bcodmo_name	String	count
attribute	N	description	String	Count, number of individuals
attribute	N	long_name	String	N
attribute	N	units	String	unitless
variable	Notes		String
attribute	Notes	bcodmo_name	String	comment
attribute	Notes	description	String	Notes
attribute	Notes	long_name	String	Notes
attribute	Notes	units	String	unitless
variable	time		double
attribute	time	_CoordinateAxisType	String	Time
attribute	time	actual_range	double	1.52838006E9, NaN
attribute	time	axis	String	T
attribute	time	bcodmo_name	String	ISO_DateTime_UTC
attribute	time	description	String	Pick up date and time in UTC and ISO formatted. The column shows up as nd when there was no local time defined for that specific row.
attribute	time	ioos_category	String	Time
attribute	time	long_name	String	Pick Up Date Time UTC ISO
attribute	time	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/
attribute	time	standard_name	String	time
attribute	time	time_origin	String	01-JAN-1970 00:00:00
attribute	time	units	String	seconds since 1970-01-01T00:00:00Z

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.