ERDDAP > info > bcodmo_dataset_805252

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[RI Community Data] - An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015 (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems)		F   I   M	background			BCO-DMO	bcodmo_dataset_805252

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute	NC_GLOBAL	acquisition_description	String	Fish and invertebrate surveys: The Rhode Island Department of Environmental Management (RIDEM) provided us with the fish and invertebrate survey data for this study. Beginning in 2010, RIDEM established permanent monitoring stations throughout all six coastal ponds (points on Fig. 1A of Yeager et al., 2020). Communities were sampled monthly from May to October each year via 150 ft beach seine net. Fish and macroinvertebrate individuals were counted, measured, and identified to species. Communities were composed of fishes and invertebrates from multiple trophic levels. Across all ponds, species richness ranged from and 11 to 39 and trophic level ranged from 2.01 \u2013 4.65 (Appendix S1 of Yeager et al., 2020). For the community analysis, we examined species and their abundances averaged across sampling stations to account for dependence within each pond and averaged across months to account for seasonal differences of species presence. To ensure even community sampling across ponds which varied in number of sampling stations, we conducted a species rarefaction test, examining both the rarefaction curves as well as the relationship between the rarefied and observed number of species (Appendix S2 of Yeager et al., 2020).
attribute	NC_GLOBAL	awards_0_award_nid	String	709941
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1652320
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1652320
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	Michael E. Sieracki
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50446
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	RI Community Data PI: Mallarie Yeager (Northeastern University) Co-PI: A. Randall Hughes (Northeastern University) Version date: 03-March-2020
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2020-03-03T17:13:54Z
attribute	NC_GLOBAL	date_modified	String	2020-03-12T13:28:14Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.805252.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-71.5056
attribute	NC_GLOBAL	geospatial_lat_max	double	41.3998
attribute	NC_GLOBAL	geospatial_lat_min	double	41.3311
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-71.5056
attribute	NC_GLOBAL	geospatial_lon_min	double	-71.7689
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/805252
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	805256
attribute	NC_GLOBAL	instruments_0_description	String	A seine net is a very long net, with or without a bag in the centre, which is set either from the shore or from a boat for surrounding a certain area and is operated with two (long) ropes fixed to its ends (for hauling and herding the fish). Seine nets are operated both in inland and in marine waters. The surrounded and catching area depends on the length of the seine and of the hauling lines. (definition from: fao.org)
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Seine Net
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	716403
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, common, Common_Name, data, dataset, dmo, erddap, frequency, latitude, longitude, management, name, oceanography, office, pond, preliminary, scientific, Scientific_Name, year
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/805252/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/805252
attribute	NC_GLOBAL	Northernmost_Northing	double	41.3998
attribute	NC_GLOBAL	param_mapping	String	{'805252': {'Latitude': 'flag - latitude', 'Longitude': 'flag - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/805252/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Northeastern University
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	NEU
attribute	NC_GLOBAL	people_0_person_name	String	Mallarie Yeager
attribute	NC_GLOBAL	people_0_person_nid	String	805269
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Northeastern University
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	NEU
attribute	NC_GLOBAL	people_1_person_name	String	A. Randall Hughes
attribute	NC_GLOBAL	people_1_person_nid	String	522929
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_2_person_nid	String	51498
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	project	String	Seagrass and Oyster Ecosystems
attribute	NC_GLOBAL	projects_0_acronym	String	Seagrass and Oyster Ecosystems
attribute	NC_GLOBAL	projects_0_description	String	NSF Award Abstract: Disease outbreaks in the ocean are increasing, causing losses of ecologically important marine species, but the factors contributing to these outbreaks are not well understood. This 5-year CAREER project will study disease prevalence and intensity in two marine foundation species - the seagrass Zostera marina and the Eastern oyster Crassostrea virginica. More specifically, host-disease relationships will be explored to understand how genetic diversity and population density of the host species impacts disease transmission and risk. This work will pair large-scale experimental restorations and smaller-scale field experiments to examine disease-host relationships across multiple spatial scales. Comparisons of patterns and mechanisms across the two coastal systems will provide an important first step towards identifying generalities in the diversity-density-disease relationship. To enhance the broader impacts and utility of this work, the experiments will be conducted in collaboration with restoration practitioners and guided by knowledge ascertained from key stakeholder groups. The project will support the development of an early career female researcher and multiple graduate and undergraduate students. Students will be trained in state-of-the-art molecular techniques to quantify oyster and seagrass parasites. Key findings from the surveys and experimental work will be incorporated into undergraduate courses focused on Conservation Biology, Marine Biology, and Disease Ecology. Finally, students in these courses will help develop social-ecological surveys and mutual learning games to stimulate knowledge transfer with stakeholders through a series of workshops. The relationship between host genetic diversity and disease dynamics is complex. In some cases, known as a dilution effect, diversity reduces disease transmission and risk. However, the opposite relationship, known as the amplification effect, can also occur when diversity increases the risk of infection. Even if diversity directly reduces disease risk, simultaneous positive effects of diversity on host density could lead to amplification by increasing disease transmission between infected and uninfected individuals. Large-scale field restorations of seagrasses (Zostera marina) and oysters (Crassostrea virginica) will be utilized to test the effects of host genetic diversity on host population density and disease prevalence/intensity. Additional field experiments independently manipulating host genetic diversity and density will examine the mechanisms leading to dilution or amplification. Conducting similar manipulations in two marine foundation species - one a clonal plant and the other a non-clonal animal - will help identify commonalities in the diversity-density-disease relationship. Further, collaborations among project scientists, students, and stakeholders will enhance interdisciplinary training and help facilitate the exchange of information to improve management and restoration efforts. As part of these efforts, targeted surveys will be used to document the perceptions and attitudes of managers and restoration practitioners regarding genetic diversity and its role in ecological resilience and restoration.
attribute	NC_GLOBAL	projects_0_end_date	String	2022-01
attribute	NC_GLOBAL	projects_0_geolocation	String	Coastal New England
attribute	NC_GLOBAL	projects_0_name	String	CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems
attribute	NC_GLOBAL	projects_0_project_nid	String	709942
attribute	NC_GLOBAL	projects_0_start_date	String	2017-02
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	41.3311
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015.
attribute	NC_GLOBAL	title	String	[RI Community Data] - An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015 (CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	-71.7689
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Year		short
attribute	Year	_FillValue	short	32767
attribute	Year	actual_range	short	2010, 2015
attribute	Year	bcodmo_name	String	year
attribute	Year	description	String	Year the organism was collected
attribute	Year	long_name	String	Year
attribute	Year	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/
attribute	Year	units	String	unitless
variable	Pond		String
attribute	Pond	bcodmo_name	String	site
attribute	Pond	description	String	Name of pond where the organism was collected
attribute	Pond	long_name	String	Pond
attribute	Pond	units	String	unitless
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	41.3311, 41.3998
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude of the pond
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	-71.7689, -71.5056
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Longitude of the pond; negative values = West
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	Common_Name		String
attribute	Common_Name	bcodmo_name	String	common_name
attribute	Common_Name	description	String	The scientific name of the organism to lowest taxonomic level possible
attribute	Common_Name	long_name	String	Common Name
attribute	Common_Name	units	String	unitless
variable	Scientific_Name		String
attribute	Scientific_Name	bcodmo_name	String	species
attribute	Scientific_Name	description	String	The common name of the organism
attribute	Scientific_Name	long_name	String	Scientific Name
attribute	Scientific_Name	units	String	unitless
variable	Frequency		float
attribute	Frequency	_FillValue	float	NaN
attribute	Frequency	actual_range	float	1.0, 3497.9
attribute	Frequency	bcodmo_name	String	abundance
attribute	Frequency	description	String	The abundance of the organism collected. Frequency was calculated by summing individuals across stations within a pond per sampling event and averaging across year.
attribute	Frequency	long_name	String	Frequency
attribute	Frequency	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P03/current/B070/
attribute	Frequency	units	String	individuals

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.