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Title Sum-
Institution Dataset ID
     data   graph     files  public An archive of the fish and inveterate data from the Rhode Island Department of Environmental
Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Fish and invertebrate surveys:
The Rhode Island Department of Environmental Management (RIDEM) provided us
with the fish and invertebrate survey data for this study. Beginning in 2010,
RIDEM established permanent monitoring stations throughout all six coastal
ponds (points on Fig. 1A of Yeager et al., 2020). Communities were sampled
monthly from May to October each year via 150 ft beach seine net. Fish and
macroinvertebrate individuals were counted, measured, and identified to
species. Communities were composed of fishes and invertebrates from multiple
trophic levels. Across all ponds, species richness ranged from and 11 to 39
and trophic level ranged from 2.01 \u2013 4.65 (Appendix S1 of Yeager et al.,
2020). For the community analysis, we examined species and their abundances
averaged across sampling stations to account for dependence within each pond
and averaged across months to account for seasonal differences of species
presence. To ensure even community sampling across ponds which varied in
number of sampling stations, we conducted a species rarefaction test,
examining both the rarefaction curves as well as the relationship between the
rarefied and observed number of species (Appendix S2 of Yeager et al., 2020).
attribute NC_GLOBAL awards_0_award_nid String 709941
attribute NC_GLOBAL awards_0_award_number String OCE-1652320
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1652320 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Michael E. Sieracki
attribute NC_GLOBAL awards_0_program_manager_nid String 50446
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String RI Community Data
PI: Mallarie Yeager (Northeastern University)
Co-PI: A. Randall Hughes (Northeastern University)
Version date: 03-March-2020
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2020-03-03T17:13:54Z
attribute NC_GLOBAL date_modified String 2020-03-12T13:28:14Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.805252.1
attribute NC_GLOBAL Easternmost_Easting double -71.5056
attribute NC_GLOBAL geospatial_lat_max double 41.3998
attribute NC_GLOBAL geospatial_lat_min double 41.3311
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -71.5056
attribute NC_GLOBAL geospatial_lon_min double -71.7689
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/805252 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 805256
attribute NC_GLOBAL instruments_0_description String A seine net is a very long net, with or without a bag in the centre, which is set either from the shore or from a boat for surrounding a certain area and is operated with two (long) ropes fixed to its ends (for hauling and herding the fish).

Seine nets are operated both in inland and in marine waters. The surrounded and catching area depends on the length of the seine and of the hauling lines.

(definition from: fao.org)
attribute NC_GLOBAL instruments_0_instrument_name String Seine Net
attribute NC_GLOBAL instruments_0_instrument_nid String 716403
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, common, Common_Name, data, dataset, dmo, erddap, frequency, latitude, longitude, management, name, oceanography, office, pond, preliminary, scientific, Scientific_Name, year
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/805252/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/805252 (external link)
attribute NC_GLOBAL Northernmost_Northing double 41.3998
attribute NC_GLOBAL param_mapping String {'805252': {'Latitude': 'flag - latitude', 'Longitude': 'flag - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/805252/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Northeastern University
attribute NC_GLOBAL people_0_affiliation_acronym String NEU
attribute NC_GLOBAL people_0_person_name String Mallarie Yeager
attribute NC_GLOBAL people_0_person_nid String 805269
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Northeastern University
attribute NC_GLOBAL people_1_affiliation_acronym String NEU
attribute NC_GLOBAL people_1_person_name String A. Randall Hughes
attribute NC_GLOBAL people_1_person_nid String 522929
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_2_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_2_person_name String Shannon Rauch
attribute NC_GLOBAL people_2_person_nid String 51498
attribute NC_GLOBAL people_2_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL project String Seagrass and Oyster Ecosystems
attribute NC_GLOBAL projects_0_acronym String Seagrass and Oyster Ecosystems
attribute NC_GLOBAL projects_0_description String NSF Award Abstract:
Disease outbreaks in the ocean are increasing, causing losses of ecologically important marine species, but the factors contributing to these outbreaks are not well understood. This 5-year CAREER project will study disease prevalence and intensity in two marine foundation species - the seagrass Zostera marina and the Eastern oyster Crassostrea virginica. More specifically, host-disease relationships will be explored to understand how genetic diversity and population density of the host species impacts disease transmission and risk. This work will pair large-scale experimental restorations and smaller-scale field experiments to examine disease-host relationships across multiple spatial scales. Comparisons of patterns and mechanisms across the two coastal systems will provide an important first step towards identifying generalities in the diversity-density-disease relationship. To enhance the broader impacts and utility of this work, the experiments will be conducted in collaboration with restoration practitioners and guided by knowledge ascertained from key stakeholder groups. The project will support the development of an early career female researcher and multiple graduate and undergraduate students. Students will be trained in state-of-the-art molecular techniques to quantify oyster and seagrass parasites. Key findings from the surveys and experimental work will be incorporated into undergraduate courses focused on Conservation Biology, Marine Biology, and Disease Ecology. Finally, students in these courses will help develop social-ecological surveys and mutual learning games to stimulate knowledge transfer with stakeholders through a series of workshops.
The relationship between host genetic diversity and disease dynamics is complex. In some cases, known as a dilution effect, diversity reduces disease transmission and risk. However, the opposite relationship, known as the amplification effect, can also occur when diversity increases the risk of infection. Even if diversity directly reduces disease risk, simultaneous positive effects of diversity on host density could lead to amplification by increasing disease transmission between infected and uninfected individuals. Large-scale field restorations of seagrasses (Zostera marina) and oysters (Crassostrea virginica) will be utilized to test the effects of host genetic diversity on host population density and disease prevalence/intensity. Additional field experiments independently manipulating host genetic diversity and density will examine the mechanisms leading to dilution or amplification. Conducting similar manipulations in two marine foundation species - one a clonal plant and the other a non-clonal animal - will help identify commonalities in the diversity-density-disease relationship. Further, collaborations among project scientists, students, and stakeholders will enhance interdisciplinary training and help facilitate the exchange of information to improve management and restoration efforts. As part of these efforts, targeted surveys will be used to document the perceptions and attitudes of managers and restoration practitioners regarding genetic diversity and its role in ecological resilience and restoration.
attribute NC_GLOBAL projects_0_end_date String 2022-01
attribute NC_GLOBAL projects_0_geolocation String Coastal New England
attribute NC_GLOBAL projects_0_name String CAREER: Linking genetic diversity, population density, and disease prevalence in seagrass and oyster ecosystems
attribute NC_GLOBAL projects_0_project_nid String 709942
attribute NC_GLOBAL projects_0_start_date String 2017-02
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 41.3311
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015.
attribute NC_GLOBAL title String An archive of the fish and inveterate data from the Rhode Island Department of Environmental Management (RIDEM) juvenile fin-fish survey across 6 Rhode Island salt ponds from 2010-2015
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -71.7689
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable Year   short  
attribute Year _FillValue short 32767
attribute Year actual_range short 2010, 2015
attribute Year bcodmo_name String year
attribute Year description String Year the organism was collected
attribute Year long_name String Year
attribute Year nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/ (external link)
attribute Year units String unitless
variable Pond   String  
attribute Pond bcodmo_name String site
attribute Pond description String Name of pond where the organism was collected
attribute Pond long_name String Pond
attribute Pond units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 41.3311, 41.3998
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude of the pond
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -71.7689, -71.5056
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude of the pond; negative values = West
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Common_Name   String  
attribute Common_Name bcodmo_name String common_name
attribute Common_Name description String The scientific name of the organism to lowest taxonomic level possible
attribute Common_Name long_name String Common Name
attribute Common_Name units String unitless
variable Scientific_Name   String  
attribute Scientific_Name bcodmo_name String species
attribute Scientific_Name description String The common name of the organism
attribute Scientific_Name long_name String Scientific Name
attribute Scientific_Name units String unitless
variable Frequency   float  
attribute Frequency _FillValue float NaN
attribute Frequency actual_range float 1.0, 3497.9
attribute Frequency bcodmo_name String abundance
attribute Frequency description String The abundance of the organism collected. Frequency was calculated by summing individuals across stations within a pond per sampling event and averaging across year.
attribute Frequency long_name String Frequency
attribute Frequency nerc_identifier String https://vocab.nerc.ac.uk/collection/P03/current/B070/ (external link)
attribute Frequency units String individuals

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.

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