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     data   graph     files  public [Underway Chl] - Particulate chlorophyll data set from samples collected using ship’s surface
underway system taken on board of the R/V Oceanus OC1701A, OC1611B, OC1603B, OC1602A, OC1601A
in the Oregon Coast (47-43 N, 126-124 W) from 2016 to 2017 (Coastal Ocean Carbon Cycling
during Wintertime Conditions)
   ?   F   I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_817214

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt
attribute NC_GLOBAL acquisition_description String Full details for collection and analyses of underway Chl samples are provided
by Go\u00f1i et al., submitted . Brief summaries are provided below.

Samples for this study were collected aboard RV Oceanus using the surface
underway scientific system.

Aboard the vessel we had access to uncontaminated seawater and collected
samples at specific times that allowed us to determine location (latitude and
longitude) and seawater characteristics (temperature and salinity) from the
ships\u2019 navigation and sensor panels. We used a semi-automated filtration
system (SAFS) described by Go\u00f1i et al., (2019) connected to Oceanus
surface underway water to collect particulate samples for chlorophyll analyis.
Surface underway water was connected to the SAFS through a manual flow-control
valve via opaque polyethylene tubing.\u00a0 A fly wheel flow meter was placed
in-line and connected to a laptop computer using a data acquisition system to
measure and record flows during the filtration stage. A switching valve with 8
ports was placed downstream from the flow meter and controlled by the
laptop.\u00a0 Under stand-by conditions, flow was directed to the
\u2018waste\u2019 port, which was fitted with unobstructed tubing that drained
into one of the ship\u2019s sinks and flowed back to sea.\u00a0 For
Chlorophyll (Chl) measurements, samples were collected via the SAFS using 25
mm pre-combusted GF/F membranes placed inside stainless steel filter holders.
Once filters were fitted in each of the sample ports, the filtration program
was started to collect samples at selected intervals.

Once the filtration run was completed, the filter housings were removed from
the SAFS, opened, and each individual filter placed in a closed container and
stored in -80oC freezer until analyses.\u00a0 Each sample was assigned a
specific time stamp (start-end of filtration process) that coincided with the
ship\u2019s clock and allowed us to retrieve location and oceanographic data
for each sample, as well as determine an overall filtration volume, which was
used to calculate total chlorophyll concentrations once analyses were
completed.

Samples were processed and analyzed following the method outlined in
Strickland and Parsons (1972). Brifely, chlorophyll a concentrations were
determined using the method of where samples were extracted in 90% acetone for
48 hours at -20\u00b0C in the dark and measured fluorometrically using a
Turner Designs 10-AU fluorometer.

References cited: Strickland & Parson, 1972; Go\u00f1i et al., 2019; Go\u00f1i
et al., submitted.
attribute NC_GLOBAL awards_0_award_nid String 772629
attribute NC_GLOBAL awards_0_award_number String OCE-1459480
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1459480 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String Henrietta N Edmonds
attribute NC_GLOBAL awards_0_program_manager_nid String 51517
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Particulate chlorophyll
PI: Miguel Goni
Data Version 1: 2020-07-02
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2020-06-30T12:20:18Z
attribute NC_GLOBAL date_modified String 2020-07-24T00:54:37Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.817214.1
attribute NC_GLOBAL Easternmost_Easting double -123.9781518
attribute NC_GLOBAL geospatial_lat_max double 45.7415
attribute NC_GLOBAL geospatial_lat_min double 43.4996
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -123.9781518
attribute NC_GLOBAL geospatial_lon_min double -125.009
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/817214 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL instruments_0_acronym String Turner Fluorometer 10-AU
attribute NC_GLOBAL instruments_0_dataset_instrument_description String Chlorophyll concentrations were determined using a Turner Designs 10-AU fluorometer.
attribute NC_GLOBAL instruments_0_dataset_instrument_nid String 817791
attribute NC_GLOBAL instruments_0_description String The Turner Designs 10-AU Field Fluorometer is used to measure Chlorophyll fluorescence. The 10AU Fluorometer can be set up for continuous-flow monitoring or discrete sample analyses. A variety of compounds can be measured using application-specific optical filters available from the manufacturer. (read more from Turner Designs, turnerdesigns.com, Sunnyvale, CA, USA)
attribute NC_GLOBAL instruments_0_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L22/current/TOOL0393/ (external link)
attribute NC_GLOBAL instruments_0_instrument_name String Turner Designs Fluorometer 10-AU
attribute NC_GLOBAL instruments_0_instrument_nid String 464
attribute NC_GLOBAL instruments_1_acronym String SBE 48
attribute NC_GLOBAL instruments_1_dataset_instrument_description String Surface water temperature was measured outside  the ship by a hull-mounted (3 m) sensor (SBE 48).
attribute NC_GLOBAL instruments_1_dataset_instrument_nid String 817788
attribute NC_GLOBAL instruments_1_description String The SBE 48 is a high-accuracy temperature recorder with non-volatile memory, designed for shipboard determination of sea surface temperature. Installed with magnets just below the water line, the SBE 48's temperature sensor is in contact with the inside of the ship's hull. For more information, see the SBE48 Manual.
attribute NC_GLOBAL instruments_1_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L05/current/134/ (external link)
attribute NC_GLOBAL instruments_1_instrument_name String Sea-Bird SBE 48 Hull Temperature Sensor
attribute NC_GLOBAL instruments_1_instrument_nid String 648
attribute NC_GLOBAL instruments_2_acronym String SBE 38
attribute NC_GLOBAL instruments_2_dataset_instrument_description String Surface water temperature was measured inside the ship by a flow-through system sensor (SBE 38).
attribute NC_GLOBAL instruments_2_dataset_instrument_nid String 817789
attribute NC_GLOBAL instruments_2_description String Sea-Bird SBE 38 Remote Digital Immersion Thermometer is a seawater temperature sensor in a 10,500 meter (34,400 ft) titanium pressure housing. Real-time temperature data is transmitted in ASCII characters (degrees C or raw counts) via an RS-232 or optional RS-485 serial interface for display or logging by PC or data logger. The SBE 38's measurement range is -5 to +35 C; absolute accuracy is better than 0.001 C (1 mK) and resolution is approximately 0.00025 C (0.25 mK).
attribute NC_GLOBAL instruments_2_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L22/current/TOOL0191/ (external link)
attribute NC_GLOBAL instruments_2_instrument_name String Sea-Bird SBE 38 Remote Digital Immersion Thermometer
attribute NC_GLOBAL instruments_2_instrument_nid String 673
attribute NC_GLOBAL instruments_3_acronym String SBE 45 MicroTSG
attribute NC_GLOBAL instruments_3_dataset_instrument_description String Salinity was measured by a SBE 45 thermosalinograph installed inside the ship in line with the flow-through system.
attribute NC_GLOBAL instruments_3_dataset_instrument_nid String 817790
attribute NC_GLOBAL instruments_3_description String A small externally powered, high-accuracy instrument, designed for shipboard determination of sea surface (pumped-water) conductivity and temperature. It is constructed of plastic and titanium to ensure long life with minimum maintenance. It may optionally be interfaced to an external SBE 38 hull temperature sensor.

Sea Bird SBE 45 MicroTSG (Thermosalinograph)
attribute NC_GLOBAL instruments_3_instrument_external_identifier String https://vocab.nerc.ac.uk/collection/L22/current/TOOL0190/ (external link)
attribute NC_GLOBAL instruments_3_instrument_name String Sea-Bird SBE 45 MicroTSG Thermosalinograph
attribute NC_GLOBAL instruments_3_instrument_nid String 528063
attribute NC_GLOBAL keywords String bco, bco-dmo, biological, chemical, chemistry, chlorophyll, concentration, concentration_of_chlorophyll_in_sea_water, cruise, Cruise_ID, data, dataset, date, density, dmo, earth, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, Earth Science > Oceans > Salinity/Density > Salinity, erddap, iso, ISO_DateTime_UTC, latitude, longitude, management, ocean, oceanography, oceans, office, practical, preliminary, pst, salinity, science, sea, sea_water_practical_salinity, seawater, temperature, time, water
attribute NC_GLOBAL keywords_vocabulary String GCMD Science Keywords
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/817214/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/817214 (external link)
attribute NC_GLOBAL Northernmost_Northing double 45.7415
attribute NC_GLOBAL param_mapping String {'817214': {'Latitude': 'flag - latitude', 'Longitude': 'flag - longitude', 'ISO_DateTime_UTC': 'flag - time'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/817214/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Oregon State University
attribute NC_GLOBAL people_0_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_0_person_name String Miguel A. Goni
attribute NC_GLOBAL people_0_person_nid String 772632
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Hawaii at Manoa
attribute NC_GLOBAL people_1_affiliation_acronym String SOEST
attribute NC_GLOBAL people_1_person_name String Angelicque E. White
attribute NC_GLOBAL people_1_person_nid String 51091
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Oregon State University
attribute NC_GLOBAL people_2_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_2_person_name String Emmanuel Alegria
attribute NC_GLOBAL people_2_person_nid String 819312
attribute NC_GLOBAL people_2_role String Scientist
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String Oregon State University
attribute NC_GLOBAL people_3_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_3_person_name String Elizabeth R. Corvi
attribute NC_GLOBAL people_3_person_nid String 819310
attribute NC_GLOBAL people_3_role String Scientist
attribute NC_GLOBAL people_3_role_type String originator
attribute NC_GLOBAL people_4_affiliation String Oregon State University
attribute NC_GLOBAL people_4_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_4_person_name String Katie Watkins-Brandt
attribute NC_GLOBAL people_4_person_nid String 556130
attribute NC_GLOBAL people_4_role String Scientist
attribute NC_GLOBAL people_4_role_type String originator
attribute NC_GLOBAL people_5_affiliation String Oregon State University
attribute NC_GLOBAL people_5_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_5_person_name String Kylie A. Welch
attribute NC_GLOBAL people_5_person_nid String 819311
attribute NC_GLOBAL people_5_role String Scientist
attribute NC_GLOBAL people_5_role_type String originator
attribute NC_GLOBAL people_6_affiliation String Oregon State University
attribute NC_GLOBAL people_6_affiliation_acronym String OSU-CEOAS
attribute NC_GLOBAL people_6_person_name String Miguel A. Goni
attribute NC_GLOBAL people_6_person_nid String 772632
attribute NC_GLOBAL people_6_role String Contact
attribute NC_GLOBAL people_6_role_type String related
attribute NC_GLOBAL people_7_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_7_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_7_person_name String Karen Soenen
attribute NC_GLOBAL people_7_person_nid String 748773
attribute NC_GLOBAL people_7_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_7_role_type String related
attribute NC_GLOBAL project String CCAW
attribute NC_GLOBAL projects_0_acronym String CCAW
attribute NC_GLOBAL projects_0_description String NSF Award Abstract:
As is true for many coastal regions worldwide, the Pacific Northwest margin is characterized by intense seasonal contrasts in conditions controlling carbon flux between the atmosphere, land, and ocean. During the wintertime, rapid and intense flooding of small coastal rivers and the associated inputs of freshwater, nutrients, and organic matter are commonplace in the Pacific Northwest. Impacts of these wintertime terrestrial-ocean transfers by small, flood-prone rivers on the upwelling regions, such as the Pacific Northwest, have been underestimated at both global and regional scales. In order to gain a complete and predictive understanding of carbon cycling in ocean margins, the biogeochemistry of periods of intense terrestrial-ocean transfers needs to be comprehensively studied. This project will evaluate the dynamics of organic matter cycling along an upwelling-dominated margin during the wintertime period of active terrestrial inputs and biological cycling using a combination of shipboard, glider, moored and remote measurements. New developments in ocean observational technologies through the Ocean Observatories Initiative (OOI)* and existing scientific infrastructure along the Oregon coast will be instrumental in achieving this goal. This work will provide research opportunities for undergraduate and graduate students, and outreach will be conducted through the Centers for Ocean Science Education Excellence Pacific Partnership, local coastal community colleges, and interpretative centers such as Oregon State University Hatfield Center, the Umpqua Discovery Center, and Oregon Coast Aquarium in an effort to educate students and the public about the research.
Globally, most studies of carbon cycling in eastern boundary regimes have focused on the upwelling phase during the summer months, resulting in a much poorer understanding of non-upwelling periods. As is many coastal upwelling systems, wintertime conditions along the Pacific Northwest margin are characterized by southerly, downwelling-favorable winds and moisture-laden storms that result in seasonal flooding by the numerous small to medium-sized rivers in the region. Elevated discharges by these coastal rivers translate into large inputs of land-derived biogeochemical relevant constituents, including freshwater, dissolved inorganic nutrients, and dissolved and particulate organic matter, which collectively rival or exceed those of the Columbia River. To understand the impact of flood-derived terrestrial inputs on the biogeochemistry of the coastal zone along the Pacific Northwest margin, researchers will conduct a detailed investigation of biogeochemical processes in the water column along the Newport Hydrographic Line off the central Oregon coast during fall/winter conditions. The project includes an intensive field effort that takes advantage of ship-based and autonomous platforms to gain comprehensive wintertime coverage. Among the project outcomes, this effort will lead to a revised paradigm of the biogeochemical drivers of carbon cycling in coastal margins.
*The Ocean Observatories Initiative (OOI) is an NSF-funded, networked infrastructure of science-driven sensor systems to measure the physical, chemical, geological and biological variables in the ocean and seafloor. For more information about OOI, please visit the website: www.oceanobservatories.org
attribute NC_GLOBAL projects_0_end_date String 2019-02
attribute NC_GLOBAL projects_0_geolocation String Oregon Coast (47-43 N, 126-124 W)
attribute NC_GLOBAL projects_0_name String Coastal Ocean Carbon Cycling during Wintertime Conditions
attribute NC_GLOBAL projects_0_project_nid String 772630
attribute NC_GLOBAL projects_0_start_date String 2015-03
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 43.4996
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String Particulate chlorophyll data set and added temperature and salinity from samples collected using ship\u2019s surface underway system taken on board of the R/V Oceanus OC1701A, OC1611B, OC1603B, OC1602A, OC1601A in the Oregon Coast (47-43 N, 126-124 W) from 2016 to 2017.
attribute NC_GLOBAL time_coverage_end String 2017-01-16T05:07Z
attribute NC_GLOBAL time_coverage_start String 2016-01-23T14:21Z
attribute NC_GLOBAL title String [Underway Chl] - Particulate chlorophyll data set from samples collected using ship’s surface underway system taken on board of the R/V Oceanus OC1701A, OC1611B, OC1603B, OC1602A, OC1601A in the Oregon Coast (47-43 N, 126-124 W) from 2016 to 2017 (Coastal Ocean Carbon Cycling during Wintertime Conditions)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -125.009
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable Cruise_ID   String  
attribute Cruise_ID bcodmo_name String cruise_id
attribute Cruise_ID description String Cruise designation
attribute Cruise_ID long_name String Cruise ID
attribute Cruise_ID units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 43.4996, 45.7415
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude measured by ship’s navigation system for sample/data collection, southern hemisphere is negative
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -125.009, -123.9781518
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude as measured by ship’s navigation system for sample/data collection, western hemisphere is negative
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Date_Time_PST   String  
attribute Date_Time_PST bcodmo_name String date_local
attribute Date_Time_PST description String Date and time of sample and data collection (pacific standard time)
attribute Date_Time_PST long_name String Date Time PST
attribute Date_Time_PST source_name String Date_Time_PST
attribute Date_Time_PST time_precision String 1970-01-01T00:00Z
attribute Date_Time_PST units String unitless
variable Temperature   float  
attribute Temperature _FillValue float NaN
attribute Temperature actual_range float 8.45, 13.21
attribute Temperature bcodmo_name String temperature
attribute Temperature description String Temperature in degrees Celsius measured at seachest in ship’s underway system at the time of sample collection
attribute Temperature long_name String Temperature
attribute Temperature units String degrees Celsius (°C)
variable Salinity   float  
attribute Salinity _FillValue float NaN
attribute Salinity actual_range float 26.3, 32.66
attribute Salinity bcodmo_name String sal
attribute Salinity colorBarMaximum double 37.0
attribute Salinity colorBarMinimum double 32.0
attribute Salinity description String Salinity measured by TSG lab unit in ship’s underway system at the time of sample collection
attribute Salinity long_name String Sea Water Practical Salinity
attribute Salinity nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/ (external link)
attribute Salinity units String unitless
variable Chlorophyll   float  
attribute Chlorophyll _FillValue float NaN
attribute Chlorophyll actual_range float 0.045, 12.874
attribute Chlorophyll bcodmo_name String chl_tot
attribute Chlorophyll colorBarMaximum double 30.0
attribute Chlorophyll colorBarMinimum double 0.03
attribute Chlorophyll colorBarScale String Log
attribute Chlorophyll description String Total chlorophyll concentrations measured in filtered samples collected from ship’s undereway system using a semi-automated filtration system.
attribute Chlorophyll long_name String Concentration Of Chlorophyll In Sea Water
attribute Chlorophyll units String miligrams of Chl per cubic meter of water (mg/m3)
variable time   double  
attribute time _CoordinateAxisType String Time
attribute time actual_range double 1.45355886E9, 1.48454322E9
attribute time axis String T
attribute time bcodmo_name String ISO_DateTime_UTC
attribute time description String Date and time of sample and data collection in UTC, standard ISO format (yyyy-mm-ddThh:mmZ)
attribute time ioos_category String Time
attribute time long_name String ISO Date Time UTC
attribute time nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/ (external link)
attribute time standard_name String time
attribute time time_origin String 01-JAN-1970 00:00:00
attribute time time_precision String 1970-01-01T00:00Z
attribute time units String seconds since 1970-01-01T00:00:00Z

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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