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     data   graph     files  public [Geneflow Samples] - Brine samples from both sea ice and cryopeg near Utqiaġvik, Alaska, USA
from 2017-05-08 to 2018-05-10 (Understanding How Virus Infection Affects Gene Flow and
Microbial Evolution in Extreme Polar Environments)
   ?   F   I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_817221

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String Sea ice brines were collected by the sackhole brine collection method.
Briefly, sea ice cores were drilled approximately three quarters of the way
through the ice column and removed to allow brine from the surrounding sea ice
to percolate for collection over several hours. Brines were collected and
pooled into 20 L acid-washed and sample rinsed cubitainers for transport to
the Barrow Arctic Research Center.

\u00a0

Cryopeg brines were collected from discrete boreholes drilled in the floor of
the CRREL Ice Mine (also known as the Barrow Permafrost Tunnel). Briefly,
permafrost boreholes were drilled with an ethanol-rinsed SIPRE corer, and
brines were collected from the boreholes with a sterile vacuum pump apparatus.
Detailed notes about cryopeg brine collection can be found in\u00a0Cooper et
al. 2019.

\u00a0

Biological abundance samples were fixed in the field immediately after each
sample collection with formaldehyde at a final concentration of 2%. All
samples were placed in insulated containers and transported to the Barrow
Arctic Research Center within a few hours of collection and stored at 4\u02daC
until aliquots were taken for each measurement. Nutrient and isotope aliquots
were frozen and stored at -20\u02daC for transport back to the University of
Washington and the University of Alaska Fairbanks. All analytical methods
except for isotope measurements are detailed in Cooper et al. 2019
attribute NC_GLOBAL awards_0_award_nid String 789279
attribute NC_GLOBAL awards_0_award_number String GBMF5488
attribute NC_GLOBAL awards_0_data_url String https://www.moore.org/grant-detail?grantId=GBMF5488 (external link)
attribute NC_GLOBAL awards_0_funder_name String Gordon and Betty Moore Foundation: Marine Microbiology Initiative
attribute NC_GLOBAL awards_0_funding_acronym String MMI
attribute NC_GLOBAL awards_0_funding_source_nid String 385
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Sample data for gene flow in arctic subzero brines
PI: Jody W. Deming
Version: 2020-06-10
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL dataset_current_state String Final and no updates
attribute NC_GLOBAL date_created String 2020-06-30T12:58:27Z
attribute NC_GLOBAL date_modified String 2020-07-16T14:18:00Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.817221.1
attribute NC_GLOBAL Easternmost_Easting double -156.5049
attribute NC_GLOBAL geospatial_lat_max double 71.473
attribute NC_GLOBAL geospatial_lat_min double 71.2944
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -156.5049
attribute NC_GLOBAL geospatial_lon_min double -156.7294
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/817221 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String abundance, ammonia, ammonium, bacterial, Bacterial_abundance, bco, bco-dmo, biological, borehole, cells, chemical, chemistry, Chl_a, Chl_a_Phaeo_ratio, chlorophyll, commerce, concentration, concentration_of_chlorophyll_in_sea_water, d18, d18O, d2H, data, dataset, date, department, dEPS, depth, dividing, dmo, doc, DOC_uM_C, earth, Earth Science > Oceans > Ocean Chemistry > Ammonia, Earth Science > Oceans > Ocean Chemistry > Chlorophyll, Earth Science > Oceans > Ocean Chemistry > Nitrate, Earth Science > Oceans > Ocean Chemistry > Phosphate, eps, erddap, ice, Ice_thickness, latitude, longitude, management, mass, mass_concentration_of_phosphate_in_sea_water, mole, mole_concentration_of_ammonium_in_sea_water, mole_concentration_of_nitrate_in_sea_water, mole_concentration_of_nitrite_in_sea_water, n02, name, nh4, nitrate, nitrite, NO2, no3, ocean, oceanography, oceans, office, pcnt, pcnt_dividing_cells, pEPS, phosphate, po4, poc, POC_mg_C_mL, POC_ug_C_mL, pon, PON_mg_N_mL, PON_ug_N_mL, preliminary, sackhole, Sackhole_Ice_Borehole_depth, salinity, sample, Sample_type, science, sea, seawater, sheet, sheet_name, SiO4, snow, Snow_thickness, station, temperature, thickness, type, u, vlp, VLP_abundance, water
attribute NC_GLOBAL keywords_vocabulary String GCMD Science Keywords
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/817221/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/817221 (external link)
attribute NC_GLOBAL Northernmost_Northing double 71.473
attribute NC_GLOBAL param_mapping String {'817221': {'lat': 'flag - latitude', 'lon': 'flag - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/817221/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String University of Washington
attribute NC_GLOBAL people_0_affiliation_acronym String UW
attribute NC_GLOBAL people_0_person_name String Jody W. Deming
attribute NC_GLOBAL people_0_person_nid String 789282
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String University of Alaska Fairbanks
attribute NC_GLOBAL people_1_affiliation_acronym String UAF
attribute NC_GLOBAL people_1_person_name String Hajo Eicken
attribute NC_GLOBAL people_1_person_nid String 789283
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String University of Alaska Fairbanks
attribute NC_GLOBAL people_2_affiliation_acronym String UAF
attribute NC_GLOBAL people_2_person_name String Go Iwahana
attribute NC_GLOBAL people_2_person_nid String 789284
attribute NC_GLOBAL people_2_role String Co-Principal Investigator
attribute NC_GLOBAL people_2_role_type String originator
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Mathew Biddle
attribute NC_GLOBAL people_3_person_nid String 708682
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Arctic Subzero Brines
attribute NC_GLOBAL projects_0_acronym String Arctic Subzero Brines
attribute NC_GLOBAL projects_0_description String GBMF Summary:
In support of developing a virus–bacterium–alga culture system and advancing methods to investigate how virus infection and stress impact gene flow and microbial evolution in cold, highly saline environments.
attribute NC_GLOBAL projects_0_end_date String 2020-04
attribute NC_GLOBAL projects_0_name String Understanding How Virus Infection Affects Gene Flow and Microbial Evolution in Extreme Polar Environments
attribute NC_GLOBAL projects_0_project_nid String 789280
attribute NC_GLOBAL projects_0_start_date String 2016-10
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 71.2944
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL summary String Brine samples were collected from both sea ice and cryopeg near Utqia\u0121vik, Alaska, USA. Snow and ice thickness along with sackhole core depth information are available for sea ice samples. Bacterial and viral abundances along with temperature, pH, salinity, inorganic nutrients, organic nutrients, EPS, and water isotopes were measured for select samples.
attribute NC_GLOBAL title String [Geneflow Samples] - Brine samples from both sea ice and cryopeg near Utqiaġvik, Alaska, USA from 2017-05-08 to 2018-05-10 (Understanding How Virus Infection Affects Gene Flow and Microbial Evolution in Extreme Polar Environments)
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -156.7294
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.5
variable sheet_name   String  
attribute sheet_name bcodmo_name String unknown
attribute sheet_name description String name of the sheet in the source file
attribute sheet_name long_name String Sheet Name
attribute sheet_name units String unitless
variable Station   String  
attribute Station bcodmo_name String station
attribute Station description String Station identifier
attribute Station long_name String Station
attribute Station units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 71.2944, 71.473
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String latitude with positive values indicating North
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -156.7294, -156.5049
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String longitude with negative values indicating West
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Date   String  
attribute Date bcodmo_name String date
attribute Date description String date of sampling following ISO-8601 format
attribute Date long_name String Date
attribute Date nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/ (external link)
attribute Date units String unitless
variable Sample_type   String  
attribute Sample_type bcodmo_name String sample_descrip
attribute Sample_type description String type of sample collected
attribute Sample_type long_name String Sample Type
attribute Sample_type units String unitless
variable Snow_thickness   byte  
attribute Snow_thickness _FillValue byte 127
attribute Snow_thickness actual_range byte 8, 18
attribute Snow_thickness bcodmo_name String unknown
attribute Snow_thickness description String Thickness of the snow
attribute Snow_thickness long_name String Snow Thickness
attribute Snow_thickness units String centimeters (cm)
variable Ice_thickness   short  
attribute Ice_thickness _FillValue short 32767
attribute Ice_thickness actual_range short 110, 128
attribute Ice_thickness bcodmo_name String unknown
attribute Ice_thickness description String Thickness of the ice
attribute Ice_thickness long_name String Ice Thickness
attribute Ice_thickness units String centimeters (cm)
variable Sackhole_Ice_Borehole_depth   String  
attribute Sackhole_Ice_Borehole_depth bcodmo_name String unknown
attribute Sackhole_Ice_Borehole_depth description String Sackhole/Ice/Borehole depth
attribute Sackhole_Ice_Borehole_depth long_name String Sackhole Ice Borehole Depth
attribute Sackhole_Ice_Borehole_depth units String centimeters (cm)
variable Temperature   byte  
attribute Temperature _FillValue byte 127
attribute Temperature actual_range byte -6, -3
attribute Temperature bcodmo_name String unknown
attribute Temperature description String UNKNOWN
attribute Temperature long_name String Temperature
attribute Temperature units String degrees Celsius (C)
variable pH   String  
attribute pH bcodmo_name String pH
attribute pH description String pH observed by paper indicator strips
attribute pH long_name String pH
attribute pH nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/PHXXZZXX/ (external link)
attribute pH units String unitless
variable Salinity   String  
attribute Salinity bcodmo_name String sal
attribute Salinity description String Salinity observed by refractometer for brines or by conductivity for bulk (direct-melted) sea ice
attribute Salinity long_name String Salinity
attribute Salinity nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/ (external link)
attribute Salinity units String parts per thousand (ppt)
variable Bacterial_abundance   int  
attribute Bacterial_abundance _FillValue int 2147483647
attribute Bacterial_abundance actual_range int 64000, 276000000
attribute Bacterial_abundance bcodmo_name String bact_abundance
attribute Bacterial_abundance description String Bacterial abundance
attribute Bacterial_abundance long_name String Bacterial Abundance
attribute Bacterial_abundance nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/BNTX (external link)
attribute Bacterial_abundance units String cells per milliliter (cells/mL)
variable VLP_abundance   int  
attribute VLP_abundance _FillValue int 2147483647
attribute VLP_abundance actual_range int 68400, 528000000
attribute VLP_abundance bcodmo_name String unknown
attribute VLP_abundance description String Virus like particle abundance
attribute VLP_abundance long_name String VLP Abundance
attribute VLP_abundance units String virus like particle per milliliter (VPL/mL)
variable PON_ug_N_mL   float  
attribute PON_ug_N_mL _FillValue float NaN
attribute PON_ug_N_mL actual_range float 0.0014, 3.9226
attribute PON_ug_N_mL bcodmo_name String PON
attribute PON_ug_N_mL description String Particulate organic nitrogen
attribute PON_ug_N_mL long_name String PON Ug N M L
attribute PON_ug_N_mL nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/MDMAP013/ (external link)
attribute PON_ug_N_mL units String micrograms of Nitrogen per milliliter (µg N/mL)
variable POC_ug_C_mL   float  
attribute POC_ug_C_mL _FillValue float NaN
attribute POC_ug_C_mL actual_range float 0.01553, 23.7821
attribute POC_ug_C_mL bcodmo_name String POC
attribute POC_ug_C_mL description String Particulate organic Carbon
attribute POC_ug_C_mL long_name String POC Ug C M L
attribute POC_ug_C_mL nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGCAP1/ (external link)
attribute POC_ug_C_mL units String micrograms of Carbon per milliliter (µg C/mL)
variable dEPS   String  
attribute dEPS bcodmo_name String unknown
attribute dEPS description String dissolved extracellular polyssacharide substances (through a 0.4 micron filter)
attribute dEPS long_name String D EPS
attribute dEPS units String g glu-eq/mL
variable pEPS   String  
attribute pEPS bcodmo_name String unknown
attribute pEPS description String particulate extracellular polyssacharide substances (over a 0.4 micron filter)
attribute pEPS long_name String P EPS
attribute pEPS units String g glu-eq/mL
variable Chl_a   float  
attribute Chl_a _FillValue float NaN
attribute Chl_a actual_range float 0.091, 369.235
attribute Chl_a bcodmo_name String chlorophyll a
attribute Chl_a colorBarMaximum double 30.0
attribute Chl_a colorBarMinimum double 0.03
attribute Chl_a colorBarScale String Log
attribute Chl_a description String Chlorophyll A
attribute Chl_a long_name String Concentration Of Chlorophyll In Sea Water
attribute Chl_a nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CPHLHPP1/ (external link)
attribute Chl_a units String milligrams per meter cubed (mg/m3)
variable Chl_a_Phaeo_ratio   float  
attribute Chl_a_Phaeo_ratio _FillValue float NaN
attribute Chl_a_Phaeo_ratio actual_range float 0.114, 7.182
attribute Chl_a_Phaeo_ratio bcodmo_name String Fo_to_Fa
attribute Chl_a_Phaeo_ratio colorBarMaximum double 30.0
attribute Chl_a_Phaeo_ratio colorBarMinimum double 0.03
attribute Chl_a_Phaeo_ratio colorBarScale String Log
attribute Chl_a_Phaeo_ratio description String ratio of chlorophyll a to phaeopigment
attribute Chl_a_Phaeo_ratio long_name String Concentration Of Chlorophyll In Sea Water
attribute Chl_a_Phaeo_ratio units String unitless
variable DOC_uM_C   float  
attribute DOC_uM_C _FillValue float NaN
attribute DOC_uM_C actual_range float 118.1, 107136.3
attribute DOC_uM_C bcodmo_name String DOC
attribute DOC_uM_C description String Dissolved organic carbon
attribute DOC_uM_C long_name String DOC U M C
attribute DOC_uM_C nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGZZZX/ (external link)
attribute DOC_uM_C units String micromole Carbon (µM C)
variable PO4   float  
attribute PO4 _FillValue float NaN
attribute PO4 actual_range float 0.1, 1.94
attribute PO4 bcodmo_name String PO4
attribute PO4 description String PO4
attribute PO4 long_name String Mass Concentration Of Phosphate In Sea Water
attribute PO4 units String micromole (µM)
variable SiO4   float  
attribute SiO4 _FillValue float NaN
attribute SiO4 actual_range float 0.26, 67.85
attribute SiO4 bcodmo_name String SiO4
attribute SiO4 description String SiO4
attribute SiO4 long_name String Si O4
attribute SiO4 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/SLCAAAZX/ (external link)
attribute SiO4 units String micromole (µM)
variable NO3   float  
attribute NO3 _FillValue float NaN
attribute NO3 actual_range float 0.0, 13.56
attribute NO3 bcodmo_name String NO3
attribute NO3 colorBarMaximum double 50.0
attribute NO3 colorBarMinimum double 0.0
attribute NO3 description String NO3
attribute NO3 long_name String Mole Concentration Of Nitrate In Sea Water
attribute NO3 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/NTRAIGGS/ (external link)
attribute NO3 units String micromole (µM)
variable NO2   float  
attribute NO2 _FillValue float NaN
attribute NO2 actual_range float 0.0, 16.24
attribute NO2 bcodmo_name String NO2
attribute NO2 colorBarMaximum double 1.0
attribute NO2 colorBarMinimum double 0.0
attribute NO2 description String NO2
attribute NO2 long_name String Mole Concentration Of Nitrite In Sea Water
attribute NO2 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/NTRIAAZX/ (external link)
attribute NO2 units String micromole (µM)
variable NH4   float  
attribute NH4 _FillValue float NaN
attribute NH4 actual_range float 0.0, 4522.96
attribute NH4 bcodmo_name String Ammonium
attribute NH4 colorBarMaximum double 5.0
attribute NH4 colorBarMinimum double 0.0
attribute NH4 description String NH4
attribute NH4 long_name String Mole Concentration Of Ammonium In Sea Water
attribute NH4 nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/AMONAAZX/ (external link)
attribute NH4 units String micromole (µM)
variable d2H   float  
attribute d2H _FillValue float NaN
attribute d2H actual_range float -190.53, -17.77
attribute d2H bcodmo_name String d2H
attribute d2H description String delta 2 H
attribute d2H long_name String D2 H
attribute d2H units String parts per thousand (o/oo)
variable d18O   float  
attribute d18O _FillValue float NaN
attribute d18O actual_range float -24.82, -1.41
attribute d18O bcodmo_name String delta18O
attribute d18O description String delta 18 O
attribute d18O long_name String D18 O
attribute d18O units String parts per thousand (o/oo)
variable pcnt_dividing_cells   float  
attribute pcnt_dividing_cells _FillValue float NaN
attribute pcnt_dividing_cells actual_range float 0.0, 30.0
attribute pcnt_dividing_cells bcodmo_name String unknown
attribute pcnt_dividing_cells description String percent dividing cells
attribute pcnt_dividing_cells long_name String Pcnt Dividing Cells
attribute pcnt_dividing_cells units String unitless
variable PON_mg_N_mL   float  
attribute PON_mg_N_mL _FillValue float NaN
attribute PON_mg_N_mL actual_range float 0.035, 26.914
attribute PON_mg_N_mL bcodmo_name String PON
attribute PON_mg_N_mL description String Particulate organic nitrogen
attribute PON_mg_N_mL long_name String PON Mg N M L
attribute PON_mg_N_mL nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/MDMAP013/ (external link)
attribute PON_mg_N_mL units String milligrams Nitrogen per milliliter (mg N/mL)
variable POC_mg_C_mL   float  
attribute POC_mg_C_mL _FillValue float NaN
attribute POC_mg_C_mL actual_range float 0.211, 166.463
attribute POC_mg_C_mL bcodmo_name String POC
attribute POC_mg_C_mL description String Particulate organic Carbon
attribute POC_mg_C_mL long_name String POC Mg C M L
attribute POC_mg_C_mL nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/CORGCAP1/ (external link)
attribute POC_mg_C_mL units String milligrams Carbon per milliliter (mgCN/mL)

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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