BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
data | files | public | [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) | M | background | BCO-DMO | bcodmo_dataset_854887_v1 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.854887.1 |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/854887 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | summary | String | Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017. The data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729. |
attribute | NC_GLOBAL | title | String | [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline) |
variable | BioProject | String | ||
attribute | BioProject | long_name | String | Bioproject |
attribute | BioProject | units | String | unitless |
variable | BioSample | String | ||
attribute | BioSample | long_name | String | Biosample |
attribute | BioSample | units | String | unitless |
variable | Sample_name | String | ||
attribute | Sample_name | long_name | String | Sample_name |
attribute | Sample_name | units | String | unitless |
variable | SRA | String | ||
attribute | SRA | long_name | String | Sra |
attribute | SRA | units | String | unitless |
variable | taxonomy_id | int | ||
attribute | taxonomy_id | actual_range | int | 238744, 238744 |
attribute | taxonomy_id | long_name | String | Taxonomy_id |
attribute | taxonomy_id | units | String | unitless |
variable | taxonomy_name | String | ||
attribute | taxonomy_name | long_name | String | Taxonomy_name |
attribute | taxonomy_name | units | String | unitless |
variable | ecotype | String | ||
attribute | ecotype | long_name | String | Ecotype |
attribute | ecotype | units | String | unitless |
variable | dev_stage | String | ||
attribute | dev_stage | long_name | String | Dev_stage |
attribute | dev_stage | units | String | unitless |
variable | sex | String | ||
attribute | sex | long_name | String | Sex |
attribute | sex | units | String | unitless |
variable | tissue | String | ||
attribute | tissue | long_name | String | Tissue |
attribute | tissue | units | String | unitless |
variable | sample_type | String | ||
attribute | sample_type | long_name | String | Sample_type |
attribute | sample_type | units | String | unitless |
variable | cross | String | ||
attribute | cross | long_name | String | Cross |
attribute | cross | units | String | unitless |
variable | treatment | String | ||
attribute | treatment | long_name | String | Treatment |
attribute | treatment | units | String | degrees Celsius |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.