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     data        files  public [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq
data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1
hybrids reared under different temperatures in 2017 (Collaborative research: The genomic
underpinnings of local adaptation despite gene flow along a coastal environmental cline)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.854887.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/854887 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids. Larvae were reared under two different temperatures to study temperature-dependent gene regulatory divergence between locally adapted Atlantic silverside populations in 2017.

The data are deposited in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) with accession numbers SRR13523227- SRR13523268 associated with BioProject PRJNA694674 and BioSamples SAMN17531688 - SAMN17531729.
attribute NC_GLOBAL title String [Atlantic silverside RNA-seq reads] - Sample and genetic accession information for RNA-seq data from whole Atlantic silverside (Menidia menidia) larvae from two populations and their F1 hybrids reared under different temperatures in 2017 (Collaborative research: The genomic underpinnings of local adaptation despite gene flow along a coastal environmental cline)
variable BioProject   String  
attribute BioProject long_name String Bioproject
attribute BioProject units String unitless
variable BioSample   String  
attribute BioSample long_name String Biosample
attribute BioSample units String unitless
variable Sample_name   String  
attribute Sample_name long_name String Sample_name
attribute Sample_name units String unitless
variable SRA   String  
attribute SRA long_name String Sra
attribute SRA units String unitless
variable taxonomy_id   int  
attribute taxonomy_id actual_range int 238744, 238744
attribute taxonomy_id long_name String Taxonomy_id
attribute taxonomy_id units String unitless
variable taxonomy_name   String  
attribute taxonomy_name long_name String Taxonomy_name
attribute taxonomy_name units String unitless
variable ecotype   String  
attribute ecotype long_name String Ecotype
attribute ecotype units String unitless
variable dev_stage   String  
attribute dev_stage long_name String Dev_stage
attribute dev_stage units String unitless
variable sex   String  
attribute sex long_name String Sex
attribute sex units String unitless
variable tissue   String  
attribute tissue long_name String Tissue
attribute tissue units String unitless
variable sample_type   String  
attribute sample_type long_name String Sample_type
attribute sample_type units String unitless
variable cross   String  
attribute cross long_name String Cross
attribute cross units String unitless
variable treatment   String  
attribute treatment long_name String Treatment
attribute treatment units String degrees Celsius

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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