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     data   graph     files  public [Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset] - 18S rRNA amplicon sequencing
of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020 (Probing subseafloor
microbial interactions via hydrothermal vent fluids: A focus on protists)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.914399.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/914399 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Single-celled microbial eukaryotes inhabit deep-sea hydrothermal vent environments and play critical ecological roles in the vent-associated microbial food web. 18S rRNA amplicon sequencing of diffuse venting fluids from two geochemically-distinct hydrothermal vent fields was applied to investigate community diversity patterns among protistan assemblages. Piccard and Von Damm vent fields are situated 20 km apart at the Mid-Cayman Rise in the Caribbean Sea. We describe species diversity patterns with respect to hydrothermal vent field and sample type, identify putative vent endemic microbial eukaryotes, and test how vent fluid geochemistry may influence microbial community diversity. Individual vent fields supported distinct and highly diverse assemblages of protists that included potentially endemic or novel vent-associated strains. This data adds to our growing knowledge of the biogeography of deep-sea microbial eukaryotes.
attribute NC_GLOBAL title String [Microbial eukaryotic diversity: Mid-Cayman Rise SRA dataset] - 18S rRNA amplicon sequencing of microbial eukaryotes from the Mid-Cayman Rise acquired Jan-Feb, 2020 (Probing subseafloor microbial interactions via hydrothermal vent fluids: A focus on protists)
variable Experiment_Accession   String  
attribute Experiment_Accession long_name String Experiment_accession
attribute Experiment_Accession units String unitless
variable Experiment_Title   String  
attribute Experiment_Title long_name String Experiment_title
attribute Experiment_Title units String unitless
variable Organism_Name   String  
attribute Organism_Name long_name String Organism_name
attribute Organism_Name units String unitless
variable Instrument   String  
attribute Instrument long_name String Instrument
attribute Instrument units String unitless
variable Study_Accession   String  
attribute Study_Accession long_name String Study_accession
attribute Study_Accession units String unitless
variable Study_Title   String  
attribute Study_Title long_name String Study_title
attribute Study_Title units String unitless
variable Sample_Accession   String  
attribute Sample_Accession long_name String Sample_accession
attribute Sample_Accession units String unitless
variable Total_Size_Mb   float  
attribute Total_Size_Mb long_name String Total_size_mb
attribute Total_Size_Mb units String Mb
variable Total_Bases   int  
attribute Total_Bases actual_range int 375000, 238791000
attribute Total_Bases long_name String Total_bases
attribute Total_Bases units String bp
variable Library_Name   String  
attribute Library_Name long_name String Library_name
attribute Library_Name units String unitless
variable Library_Strategy   String  
attribute Library_Strategy long_name String Library_strategy
attribute Library_Strategy units String unitless
variable Library_Source   String  
attribute Library_Source long_name String Library_source
attribute Library_Source units String unitless
variable Library_Selection   String  
attribute Library_Selection long_name String Library_selection
attribute Library_Selection units String unitless
variable Vent_field   String  
attribute Vent_field long_name String Vent_field
attribute Vent_field units String unitless
variable Collection   String  
attribute Collection long_name String Collection
attribute Collection units String unitless
variable Vent_name   String  
attribute Vent_name long_name String Vent_name
attribute Vent_name units String unitless
variable DiveID   String  
attribute DiveID long_name String Diveid
attribute DiveID units String unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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