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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
data | graph | files | public | [Zostera marina whole genome resequencing] - Sample collection and sequence accession information for Zostera marina whole genome resequencing from specimens collected at 16 geographic locations worldwide in 2017 (Using genomics to link traits to ecosystem function in the eelgrass Zostera marina) | F I M | background | BCO-DMO | bcodmo_dataset_924852_v1 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
---|---|---|---|---|
attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/ |
attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.924852.1 |
attribute | NC_GLOBAL | Easternmost_Easting | double | 144.9032 |
attribute | NC_GLOBAL | geospatial_lat_max | double | 67.268 |
attribute | NC_GLOBAL | geospatial_lat_min | double | 32.71376 |
attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
attribute | NC_GLOBAL | geospatial_lon_max | double | 144.9032 |
attribute | NC_GLOBAL | geospatial_lon_min | double | -164.7619 |
attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/924852 |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. |
attribute | NC_GLOBAL | Northernmost_Northing | double | 67.268 |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | Southernmost_Northing | double | 32.71376 |
attribute | NC_GLOBAL | summary | String | This dataset includes sample collection and sequence accession information for Zostera marina whole genome resequencing from specimens collected at 16 geographic locations worldwide in 2017. Sequence accessions are housed in the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA). |
attribute | NC_GLOBAL | title | String | [Zostera marina whole genome resequencing] - Sample collection and sequence accession information for Zostera marina whole genome resequencing from specimens collected at 16 geographic locations worldwide in 2017 (Using genomics to link traits to ecosystem function in the eelgrass Zostera marina) |
attribute | NC_GLOBAL | Westernmost_Easting | double | -164.7619 |
variable | SampleID | String | ||
attribute | SampleID | long_name | String | Sampleid |
attribute | SampleID | units | String | unitless |
variable | BioProject | String | ||
attribute | BioProject | long_name | String | Bioproject |
attribute | BioProject | units | String | unitless |
variable | Library_Code | String | ||
attribute | Library_Code | long_name | String | Library_code |
attribute | Library_Code | units | String | unitless |
variable | Sample_Description | String | ||
attribute | Sample_Description | long_name | String | Sample_description |
attribute | Sample_Description | units | String | unitless |
variable | Location_Name | String | ||
attribute | Location_Name | long_name | String | Location_name |
attribute | Location_Name | units | String | unitless |
variable | latitude | float | ||
attribute | latitude | _CoordinateAxisType | String | Lat |
attribute | latitude | actual_range | float | 32.71376, 67.268 |
attribute | latitude | axis | String | Y |
attribute | latitude | ioos_category | String | Location |
attribute | latitude | long_name | String | Latitude |
attribute | latitude | standard_name | String | latitude |
attribute | latitude | units | String | degrees_north |
variable | longitude | float | ||
attribute | longitude | _CoordinateAxisType | String | Lon |
attribute | longitude | actual_range | float | -164.7619, 144.9032 |
attribute | longitude | axis | String | X |
attribute | longitude | ioos_category | String | Location |
attribute | longitude | long_name | String | Long |
attribute | longitude | standard_name | String | longitude |
attribute | longitude | units | String | degrees_east |
variable | SRA_accession | String | ||
attribute | SRA_accession | long_name | String | Sra_accession |
attribute | SRA_accession | units | String | unitless |
variable | Library_type | String | ||
attribute | Library_type | long_name | String | Library_type |
attribute | Library_type | units | String | unitless |
variable | Sampled_tissue | String | ||
attribute | Sampled_tissue | long_name | String | Sampled_tissue |
attribute | Sampled_tissue | units | String | unitless |
variable | Instrument | String | ||
attribute | Instrument | long_name | String | Instrument |
attribute | Instrument | units | String | unitless |
variable | reads | String | ||
attribute | reads | long_name | String | Reads |
attribute | reads | units | String | unitless |
variable | Number_of_bases_Raw_fastq | int | ||
attribute | Number_of_bases_Raw_fastq | long_name | String | Number_of_bases_raw_fastq |
attribute | Number_of_bases_Raw_fastq | units | String | count |
variable | Coverage_Raw_fastq | float | ||
attribute | Coverage_Raw_fastq | actual_range | float | 23.21, 106.84 |
attribute | Coverage_Raw_fastq | long_name | String | Coverage_raw_fastq |
attribute | Coverage_Raw_fastq | units | String | genomes |
variable | Number_of_bases_Clean_fastq | int | ||
attribute | Number_of_bases_Clean_fastq | long_name | String | Number_of_bases_clean_fastq |
attribute | Number_of_bases_Clean_fastq | units | String | count |
variable | Coverage_Clean_fastq | float | ||
attribute | Coverage_Clean_fastq | actual_range | float | 21.0, 99.31 |
attribute | Coverage_Clean_fastq | long_name | String | Coverage_clean_fastq |
attribute | Coverage_Clean_fastq | units | String | genomes |
variable | Mapped_pcnt | float | ||
attribute | Mapped_pcnt | actual_range | float | 16.86, 99.96 |
attribute | Mapped_pcnt | long_name | String | Mapped_pcnt |
attribute | Mapped_pcnt | units | String | percent |
variable | Properly_paired_pcnt | float | ||
attribute | Properly_paired_pcnt | actual_range | float | 15.4, 98.81 |
attribute | Properly_paired_pcnt | long_name | String | Properly_paired_pcnt |
attribute | Properly_paired_pcnt | units | String | percent |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.