ERDDAP > info > bcodmo_dataset_928636_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data			files	public	[Ca. Aquarickettsia rohweri transcriptomes] - Sampling and experimental metadata related to ' Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility)		M	background			BCO-DMO	bcodmo_dataset_928636_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.928636.1
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/928636
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	summary	String	This dataset contains sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome sequences housed at the National Center for Biotechnology Information (NCBI) Sequence Read Archive (SRA) under BioProject PRJNA1048415. All host colonies (Acropora cervicornis genotype ML-50) were collected from the same location, the Mote Marine Laboratory in situ coral nursery in Looe Key, Lower Florida Keys between April and June of 2019. The Rickettsiales-like bacterial parasite, 'Candidatus' Aquarickettsia rohweri (NCBI:txid2602574) is a ubiquitous coral symbiont that is strongly linked to coral disease susceptibility in staghorn coral, and is undergoing positive selection across the Caribbean. Although ‘Ca.' A. rohweri is a putative parasite, little is known about the activity of this bacterium in coral tissue. We performed a transcriptomic analyses of ‘Ca.' A. rohweri populations during a 6-week nutrient exposure experiment. ‘Ca.' A. rohweri energy scavenging genes and those potentially involved during habitat transition are significantly upregulated during enrichment. Specifically, transcripts involved in signaling, virulence, two-component systems, and nutrient import genes are elevated under higher nutrients. These data support the predicted role of ‘Ca.' A. rohweri as a highly active nutrient-responsive A. cervicornis parasite and provide a glimpse at the mechanism of induced disease susceptibility while implicating nutrient exposure in its horizontal transmission.
attribute	NC_GLOBAL	title	String	[Ca. Aquarickettsia rohweri transcriptomes] - Sampling and experimental metadata related to 'Candidatus' Aquarickettsia rohweri transcriptome data from host Acropora cervicornis colonies collected at Looe Key, Lower Florida Keys from Apr to Jun of 2019 (Collaborative Research: Tracking the interacting roles of the environment, host genotype, and a novel Rickettsiales in coral disease susceptibility)
variable	Sample_name		String
attribute	Sample_name	long_name	String	Sample_name
attribute	Sample_name	units	String	unitless
variable	BioSample_Accession		String
attribute	BioSample_Accession	long_name	String	Biosample_accession
attribute	BioSample_Accession	units	String	unitless
variable	SRA		String
attribute	SRA	long_name	String	Sra
attribute	SRA	units	String	unitless
variable	BioProject		String
attribute	BioProject	long_name	String	Bioproject
attribute	BioProject	units	String	unitless
variable	Data_Type		String
attribute	Data_Type	long_name	String	Data_type
attribute	Data_Type	units	String	unitless
variable	Scope		String
attribute	Scope	long_name	String	Scope
attribute	Scope	units	String	unitless
variable	Organism		String
attribute	Organism	long_name	String	Organism
attribute	Organism	units	String	unitless
variable	Collected_Host_Organism		String
attribute	Collected_Host_Organism	long_name	String	Collected_host_organism
attribute	Collected_Host_Organism	units	String	unitless
variable	Strain		String
attribute	Strain	long_name	String	Strain
attribute	Strain	units	String	unitless
variable	isolation_source		String
attribute	isolation_source	long_name	String	Isolation_source
attribute	isolation_source	units	String	unitless
variable	Collection_Year		String
attribute	Collection_Year	long_name	String	Collection_year
attribute	Collection_Year	units	String	unitless
variable	Collection_date_note		String
attribute	Collection_date_note	long_name	String	Collection_date_note
attribute	Collection_date_note	units	String	unitless
variable	Treatment		String
attribute	Treatment	long_name	String	Treatment
attribute	Treatment	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.