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     data   graph     files  public [Synechococcus DOP Hydrolysis Experiment - hydrolysis rates] - Dissolved organic
phosphorus (DOP) hydrolysis rates from marine cyanobacterium Synechococcus (WH8102 and WH5701)
laboratory cultures from experiments between 2018-2023 (Collaborative Research: Assessing the
role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)
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The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.928984.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/928984 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Dissolved organic phosphorus (DOP) hydrolysis rates from marine cyanobacterium Synechococcus (WH8102 and WH5701) laboratory cultures. These data were collected as part of a study of "Dissolved organic phosphorus bond-class utilization by Synechococcus" (Waggoner et al., submitted).



Study Abstract:
Dissolved organic phosphorus (DOP) contains compounds with phosphoester (P-O-C), phosphoanhydride (P-O-P), and phosphorus-carbon (P-C) bonds. Despite DOP's importance as a nutritional source for marine microorganisms, the bioavailability of each bond-class to the widespread cyanobacterium Synechococcus remains largely unknown. This study evaluates bond-class specific DOP utilization by cultures of an open ocean and a coastal ocean Synechococcus strain. Both strains exhibited comparable growth rates when provided phosphate, short-chain and long-chain polyphosphate (P-O-P), adenosine 5'-triphosphate (P-O-C and P-O-P), and glucose-6-phosphate (P-O-C) as the phosphorus source. However, growth rates on phosphomonoester adenosine 5'-monophosphate (P-O-C) and phosphodiester bis(4-methylumbelliferyl) phosphate (C-O-P-O-C) varied between strains, and neither strain grew on selected phosphonates. Consistent with the growth measurements, both strains preferentially hydrolyzed 3-polyphosphate, followed by adenosine 5'-triphosphate, and then adenosine 5'-monophosphate. The strains' exoproteome contained phosphorus hydrolases, which combined with enhanced cell-free hydrolysis of 3-polyphosphate and adenosine 5'-triphosphate under phosphate deficiency, suggests active mineralization of short-chain polyphosphate by Synechococcus' exoproteins. Synechococcus alkaline phosphatases presented broad substrate specificities, including activity towards short-chain polyphosphate, with varying affinities between the two strains. Collectively, these findings underscore the potentially significant role of compounds with phosphoanhydride bonds in Synechococcus phosphorus nutrition, thereby expanding our understanding of microbially-mediated DOP cycling in marine ecosystems.
attribute NC_GLOBAL title String [Synechococcus DOP Hydrolysis Experiment - hydrolysis rates] - Dissolved organic phosphorus (DOP) hydrolysis rates from marine cyanobacterium Synechococcus (WH8102 and WH5701) laboratory cultures from experiments between 2018-2023 (Collaborative Research: Assessing the role of compound-specific phosphorus hydrolase transformations in the marine phosphorus cycle)
variable synechococcus_strain   String  
attribute synechococcus_strain long_name String Synechococcus_strain
attribute synechococcus_strain units String unitless
variable time_day   int  
attribute time_day actual_range int 1, 23
attribute time_day long_name String Time_day
attribute time_day units String days
variable sample_type   String  
attribute sample_type long_name String Sample_type
attribute sample_type units String unitless
variable media_and_phosphate_level   String  
attribute media_and_phosphate_level long_name String Media_and_phosphate_level
attribute media_and_phosphate_level units String unitless
variable DOP_substrate   String  
attribute DOP_substrate long_name String Dop_substrate
attribute DOP_substrate units String unitless
variable hydrolysis_rates_trip1   float  
attribute hydrolysis_rates_trip1 actual_range float 0.0, 520.05
attribute hydrolysis_rates_trip1 long_name String Hydrolysis_rates_trip1
attribute hydrolysis_rates_trip1 units String attomols per cel per hour (amol cell -1 hr -1)
variable hydrolysis_rates_trip2   float  
attribute hydrolysis_rates_trip2 actual_range float 0.0, 501.2
attribute hydrolysis_rates_trip2 long_name String Hydrolysis_rates_trip2
attribute hydrolysis_rates_trip2 units String attomols per cel per hour (amol cell -1 hr -1)
variable hydrolysis_rates_trip3   float  
attribute hydrolysis_rates_trip3 actual_range float 0.0, 485.95
attribute hydrolysis_rates_trip3 long_name String Hydrolysis_rates_trip3
attribute hydrolysis_rates_trip3 units String attomols per cel per hour (amol cell -1 hr -1)

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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