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     data   graph     files  public [Kelletia kelletii Pooled RADseq] - Restriction site-associated DNA sequence metadata of
Kelletia kelletii collected in California, USA and Baja, Mexico in 2015 to 2017 (Collaborative
Research: RUI: Combined spatial and temporal analyses of population connectivity during a
northern range expansion)
   ?   F   I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_958359_v1

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.958359.1
attribute NC_GLOBAL Easternmost_Easting double -114.362
attribute NC_GLOBAL geospatial_lat_max double 36.61817
attribute NC_GLOBAL geospatial_lat_min double 27.15326
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -114.362
attribute NC_GLOBAL geospatial_lon_min double -121.9392
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/958359 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 36.61817
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 27.15326
attribute NC_GLOBAL summary String Climate-driven warming and changes in major ocean currents enable poleward transport and range expansions of many marine species. Here, we report the population genetic structure for the gastropod Kelletia kelletii, a commercial fisheries species and subtidal predator with top-down food web effects, whose populations have recently undergone climate-driven northward range expansion.

This dataset includes sample id, collection site and year, tissue type, length, and extraction information for samples sequenced. We genotyped 598 adults from 13 locations across the species' historical and expanded range (∼800 km) using reduced representation genomic sequencing (RAD-seq). Analyses of 40,747 SNPs show evidence for long-distance larval dispersal of K. kelletii larvae from a central historical range site (Point Loma, CA) hundreds of km into the expanded northern range (Big Creek, CA), which seems most likely to result from transport during an El Niño Southern Oscillation (ENSO) event rather than consistent on-going gene flow. Furthermore, despite smaller geographic distances among some sampled expanded-range populations, their genetic divergence exceeds that among the historical range sampled populations, suggesting multiple origins of the expanded-range populations. Given the frequency and magnitude of ENSO events are predicted to increase with climate change, understanding the factors driving changes in population connectivity is crucial for establishing effective management strategies to ensure the persistence of this and other economically and ecologically important species.
attribute NC_GLOBAL title String [Kelletia kelletii Pooled RADseq] - Restriction site-associated DNA sequence metadata of Kelletia kelletii collected in California, USA and Baja, Mexico in 2015 to 2017 (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion)
attribute NC_GLOBAL Westernmost_Easting double -121.9392
variable CLNo   String  
attribute CLNo long_name String Clno
attribute CLNo units String unitless
variable CapLabel   String  
attribute CapLabel long_name String Caplabel
attribute CapLabel units String unitless
variable SiteDescription   String  
attribute SiteDescription long_name String Sitedescription
attribute SiteDescription units String unitless
variable SiteCode   String  
attribute SiteCode long_name String Sitecode
attribute SiteCode units String unitless
variable latitude   float  
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 27.15326, 36.61817
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   float  
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -121.9392, -114.362
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable SiteCodeLetter_cap   String  
attribute SiteCodeLetter_cap long_name String Sitecodeletter_cap
attribute SiteCodeLetter_cap units String unitless
variable Whelk_ID   String  
attribute Whelk_ID long_name String Whelk_id
attribute Whelk_ID units String unitless
variable TissueType   String  
attribute TissueType long_name String Tissuetype
attribute TissueType units String unitless
variable Year   String  
attribute Year long_name String Year
attribute Year units String unitless
variable ExtractionCap   String  
attribute ExtractionCap long_name String Extractioncap
attribute ExtractionCap units String unitless
variable DateOfExtraction   String  
attribute DateOfExtraction long_name String Dateofextraction
attribute DateOfExtraction units String unitless
variable PerformedBy   int  
attribute PerformedBy actual_range int 1, 6
attribute PerformedBy long_name String Performedby
attribute PerformedBy units String unitless
variable OriginalCalculatedConcentration   float  
attribute OriginalCalculatedConcentration actual_range float 0.0, 1000.0
attribute OriginalCalculatedConcentration long_name String Originalcalculatedconcentration
attribute OriginalCalculatedConcentration units String ug/ul
variable Elution_TEBuffer   int  
attribute Elution_TEBuffer actual_range int 100, 200
attribute Elution_TEBuffer long_name String Elution_tebuffer
attribute Elution_TEBuffer units String uL
variable DNAYield   float  
attribute DNAYield actual_range float 0.0, 95.0
attribute DNAYield long_name String Dnayield
attribute DNAYield units String ug
variable Measurement   float  
attribute Measurement actual_range float 11.67, 37.56
attribute Measurement long_name String Measurement
attribute Measurement units String mm
variable PoolRADseq   int  
attribute PoolRADseq actual_range int 0, 1
attribute PoolRADseq long_name String Poolradseq
attribute PoolRADseq units String unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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