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BCO-DMO ERDDAP
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| Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible
| Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| data | graph | files | public | [OC1704A metagenome accession numbers] - Metagenome accession numbers for samples collected in the eastern tropical North Pacific Ocean in 2017 on R/V Oceanus cruise 1704A (CAREER: Oxygen sensitivity of aerobic respiration and nitrification in oxygen minimum zones and biogeochemical feedbacks to deoxygenation) |
| F I M | background
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| BCO-DMO | bcodmo_dataset_986605_v1 |
| Row Type | Variable Name | Attribute Name | Data Type | Value |
|---|---|---|---|---|
| attribute | NC_GLOBAL | cdm_data_type | String | Other |
| attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
| attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
| attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
| attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/![]() |
| attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.986605.1 |
| attribute | NC_GLOBAL | Easternmost_Easting | double | -106.5 |
| attribute | NC_GLOBAL | geospatial_lat_max | double | 20.5 |
| attribute | NC_GLOBAL | geospatial_lat_min | double | 16.0 |
| attribute | NC_GLOBAL | geospatial_lat_units | String | degrees_north |
| attribute | NC_GLOBAL | geospatial_lon_max | double | -106.5 |
| attribute | NC_GLOBAL | geospatial_lon_min | double | -110.0 |
| attribute | NC_GLOBAL | geospatial_lon_units | String | degrees_east |
| attribute | NC_GLOBAL | geospatial_vertical_max | double | 180.0 |
| attribute | NC_GLOBAL | geospatial_vertical_min | double | 25.0 |
| attribute | NC_GLOBAL | geospatial_vertical_positive | String | down |
| attribute | NC_GLOBAL | geospatial_vertical_units | String | m |
| attribute | NC_GLOBAL | infoUrl | String | https://osprey.bco-dmo.org/dataset/986605![]() |
| attribute | NC_GLOBAL | institution | String | BCO-DMO |
| attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. |
| attribute | NC_GLOBAL | Northernmost_Northing | double | 20.5 |
| attribute | NC_GLOBAL | sourceUrl | String | (local files) |
| attribute | NC_GLOBAL | Southernmost_Northing | double | 16.0 |
| attribute | NC_GLOBAL | summary | String | Water samples were collected for DNA extraction using sampling bottles deployed on the CTD rosette. At each depth, 2L samples were filtered through 0.22 µm filters (Millipore, Darmstadt, Germany) using a peristaltic pump and frozen until extraction. DNA was extracted following Beman et al. (2012) and sent for metagenome sequencing in the Vincent J. Coates Genome Sequencing Laboratory (GSL) at the University of California, Berkeley. For each sample, 250 ng of genomic DNA was sheared and libraries were prepared using the KAPA HyperPrep Kit (Kapa Biosystems, Wilmington, MA, USA). Samples were pooled into a single lane and sequenced via 150- cycle paired-end sequencing on the Illumina HiSeq 4000 platform (Illumina, Inc., San Diego, CA, USA). |
| attribute | NC_GLOBAL | title | String | [OC1704A metagenome accession numbers] - Metagenome accession numbers for samples collected in the eastern tropical North Pacific Ocean in 2017 on R/V Oceanus cruise 1704A (CAREER: Oxygen sensitivity of aerobic respiration and nitrification in oxygen minimum zones and biogeochemical feedbacks to deoxygenation) |
| attribute | NC_GLOBAL | Westernmost_Easting | double | -110.0 |
| variable | latitude | float | ||
| attribute | latitude | _CoordinateAxisType | String | Lat |
| attribute | latitude | actual_range | float | 16.0, 20.5 |
| attribute | latitude | axis | String | Y |
| attribute | latitude | ioos_category | String | Location |
| attribute | latitude | long_name | String | Latitude |
| attribute | latitude | standard_name | String | latitude |
| attribute | latitude | units | String | degrees_north |
| variable | longitude | float | ||
| attribute | longitude | _CoordinateAxisType | String | Lon |
| attribute | longitude | actual_range | float | -110.0, -106.5 |
| attribute | longitude | axis | String | X |
| attribute | longitude | ioos_category | String | Location |
| attribute | longitude | long_name | String | Longitude |
| attribute | longitude | standard_name | String | longitude |
| attribute | longitude | units | String | degrees_east |
| variable | Date | String | ||
| attribute | Date | long_name | String | Date |
| attribute | Date | units | String | unitless |
| variable | Station | int | ||
| attribute | Station | actual_range | int | 1, 3 |
| attribute | Station | long_name | String | Station |
| attribute | Station | units | String | unitless |
| variable | depth | float | ||
| attribute | depth | _CoordinateAxisType | String | Height |
| attribute | depth | _CoordinateZisPositive | String | down |
| attribute | depth | actual_range | float | 25.0, 180.0 |
| attribute | depth | axis | String | Z |
| attribute | depth | ioos_category | String | Location |
| attribute | depth | long_name | String | Depth |
| attribute | depth | positive | String | down |
| attribute | depth | standard_name | String | depth |
| attribute | depth | units | String | m |
| variable | Repository | String | ||
| attribute | Repository | long_name | String | Repository |
| attribute | Repository | units | String | unitless |
| variable | Biosample_accession | String | ||
| attribute | Biosample_accession | long_name | String | Biosample_accession |
| attribute | Biosample_accession | units | String | unitless |
| variable | Sequencing_technology | String | ||
| attribute | Sequencing_technology | long_name | String | Sequencing_technology |
| attribute | Sequencing_technology | units | String | unitless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.