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     data   graph     files  public [OC1704A metagenome accession numbers] - Metagenome accession numbers for samples collected
in the eastern tropical North Pacific Ocean in 2017 on R/V Oceanus cruise 1704A (CAREER:
Oxygen sensitivity of aerobic respiration and nitrification in oxygen minimum zones and
biogeochemical feedbacks to deoxygenation)
   ?   F   I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_986605_v1

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.986605.1
attribute NC_GLOBAL Easternmost_Easting double -106.5
attribute NC_GLOBAL geospatial_lat_max double 20.5
attribute NC_GLOBAL geospatial_lat_min double 16.0
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -106.5
attribute NC_GLOBAL geospatial_lon_min double -110.0
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL geospatial_vertical_max double 180.0
attribute NC_GLOBAL geospatial_vertical_min double 25.0
attribute NC_GLOBAL geospatial_vertical_positive String down
attribute NC_GLOBAL geospatial_vertical_units String m
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/986605 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL Northernmost_Northing double 20.5
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 16.0
attribute NC_GLOBAL summary String Water samples were collected for DNA extraction using sampling bottles deployed on the CTD rosette. At each depth, 2L samples were filtered through 0.22 µm filters (Millipore, Darmstadt, Germany) using a peristaltic pump and frozen until extraction. DNA was extracted following Beman et al. (2012) and sent for metagenome sequencing in the Vincent J. Coates Genome Sequencing Laboratory (GSL) at the University of California, Berkeley. For each sample, 250 ng of genomic DNA was sheared and libraries were prepared using the KAPA HyperPrep Kit (Kapa Biosystems, Wilmington, MA, USA). Samples were pooled into a single lane and sequenced via 150- cycle paired-end sequencing on the Illumina HiSeq 4000 platform (Illumina, Inc., San Diego, CA, USA).
attribute NC_GLOBAL title String [OC1704A metagenome accession numbers] - Metagenome accession numbers for samples collected in the eastern tropical North Pacific Ocean in 2017 on R/V Oceanus cruise 1704A (CAREER: Oxygen sensitivity of aerobic respiration and nitrification in oxygen minimum zones and biogeochemical feedbacks to deoxygenation)
attribute NC_GLOBAL Westernmost_Easting double -110.0
variable latitude   float  
attribute latitude _CoordinateAxisType String Lat
attribute latitude actual_range float 16.0, 20.5
attribute latitude axis String Y
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   float  
attribute longitude _CoordinateAxisType String Lon
attribute longitude actual_range float -110.0, -106.5
attribute longitude axis String X
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Date   String  
attribute Date long_name String Date
attribute Date units String unitless
variable Station   int  
attribute Station actual_range int 1, 3
attribute Station long_name String Station
attribute Station units String unitless
variable depth   float  
attribute depth _CoordinateAxisType String Height
attribute depth _CoordinateZisPositive String down
attribute depth actual_range float 25.0, 180.0
attribute depth axis String Z
attribute depth ioos_category String Location
attribute depth long_name String Depth
attribute depth positive String down
attribute depth standard_name String depth
attribute depth units String m
variable Repository   String  
attribute Repository long_name String Repository
attribute Repository units String unitless
variable Biosample_accession   String  
attribute Biosample_accession long_name String Biosample_accession
attribute Biosample_accession units String unitless
variable Sequencing_technology   String  
attribute Sequencing_technology long_name String Sequencing_technology
attribute Sequencing_technology units String unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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