ERDDAP > info > bcodmo_dataset_988179_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[EN638 cell count selfish] - Detection and Quantification of Cells Exhibiting 'Selfish' Uptake in samples taken during R/V Endeavor cruise EN638 in the Western North Atlantic in May 2019 (A mechanistic microbial underpinning for the size-reactivity continuum of dissolved organic carbon degradation)		F   I   M	background			BCO-DMO	bcodmo_dataset_988179_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.988179.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-53.3949
attribute	NC_GLOBAL	geospatial_lat_max	double	42.83954
attribute	NC_GLOBAL	geospatial_lat_min	double	34.6369
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-53.3949
attribute	NC_GLOBAL	geospatial_lon_min	double	-72.0021
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	5580.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	2.5
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/988179
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	42.83954
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	34.6369
attribute	NC_GLOBAL	summary	String	Marine dissolved organic carbon (DOC) is one of the largest actively-cycling carbon reservoirs on earth—comparable in magnitude to atmospheric CO2 (Hansell 2013)—and thus is an essential component of the global carbon cycle. DOC has a multitude of sources, including phytoplankton productivity, grazing, excretion, solubilization from particulate organic carbon (POC), viral lysis, and riverine input; the major DOC sink in the ocean is consumption by heterotrophic microbial communities (Carlson & Hansell 2015). Measurement of bulk DOC characteristics such as 14C age and molecular size have demonstrated that the high molecular weight (HMW) DOC fraction is generally younger and more biologically reactive than the low molecular weight (LMW) fraction (e.g. Guo et al. 1996; Walker et al. 2016). We know that a substantial fraction of HMW DOC consists of carbohydrates, including neutral sugars, and that its concentration is lower in the deep ocean than in the upper mesopelagic/surface ocean (Benner & Amon 2015). Characterization of the HMW DOC fraction has primarily used chemical measurements that provide information about monomeric constituents (Benner et al. 1992; Kaiser & Benner 2009), but yield no information on the order in which such constituents are linked together, or about the 3D structure of the intact HMW DOC. Beyond these observations and measurements, however, the specific factors controlling the rate, location, and extent to which DOC is transformed and remineralized by heterotrophic microbial communities in the ocean are still not well understood.   A key focus of this project's field work is investigating the potential of marine heterotrophic microbial communities from different water masses and under differing conditions of organic matter availability to hydrolyze six well-characterized high-molecular-weight (HMW) polysaccharides (arabinogalactan, chondroitin sulfate, fucoidan, laminarin, pullulan, and xylan). To better contextualize this hydrolysis, bulk water characterization of the deep chlorophyll maximum (DCM), oxygen minimum zone (OMZ), and bottom waters used in our mesocosm incubation experiments was performed.   Here we present, in collaboration with colleagues from the Max Planck Institute for Marine Microbiology, the detection and quantification of microbial cells exhibiting selfish uptake behavior of fluorescently-labeled HMW polysaccharides. This dataset includes sample collection metadata, environmental variables, experimental variables, the number of cells detected exhibiting "selfish" uptake, and total cellular abundance.
attribute	NC_GLOBAL	time_coverage_end	String	2019-05-25T07:30:00Z
attribute	NC_GLOBAL	time_coverage_start	String	2019-05-17T00:20:00Z
attribute	NC_GLOBAL	title	String	[EN638 cell count selfish] - Detection and Quantification of Cells Exhibiting 'Selfish' Uptake in samples taken during R/V Endeavor cruise EN638 in the Western North Atlantic in May 2019 (A mechanistic microbial underpinning for the size-reactivity continuum of dissolved organic carbon degradation)
attribute	NC_GLOBAL	Westernmost_Easting	double	-72.0021
variable	deployment		String
attribute	deployment	long_name	String	Deployment
attribute	deployment	units	String	unitless
variable	station		String
attribute	station	long_name	String	Station
attribute	station	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	34.6369, 42.83954
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-72.0021, -53.3949
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	time		double
attribute	time	_CoordinateAxisType	String	Time
attribute	time	actual_range	double	1.5580524E9, 1.5587694E9
attribute	time	axis	String	T
attribute	time	ioos_category	String	Time
attribute	time	long_name	String	Iso_datetime_utc
attribute	time	standard_name	String	time
attribute	time	time_origin	String	01-JAN-1970 00:00:00
attribute	time	units	String	seconds since 1970-01-01T00:00:00Z
variable	cast_number		String
attribute	cast_number	long_name	String	Cast_number
attribute	cast_number	units	String	unitless
variable	depth_name		String
attribute	depth_name	long_name	String	Depth_name
attribute	depth_name	units	String	unitless
variable	depth		float
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	actual_range	float	2.5, 5580.0
attribute	depth	axis	String	Z
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth_actual
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	sample_type		String
attribute	sample_type	long_name	String	Sample_type
attribute	sample_type	units	String	unitless
variable	unamended_amended		String
attribute	unamended_amended	long_name	String	Unamended_amended
attribute	unamended_amended	units	String	unitless
variable	substrate		String
attribute	substrate	long_name	String	Substrate
attribute	substrate	units	String	unitless
variable	timepoint_days		float
attribute	timepoint_days	actual_range	float	0.0, 30.0
attribute	timepoint_days	long_name	String	Timepoint_days
attribute	timepoint_days	units	String	days
variable	timepoint_hours		float
attribute	timepoint_hours	actual_range	float	1.0, 720.0
attribute	timepoint_hours	long_name	String	Timepoint_hours
attribute	timepoint_hours	units	String	hours
variable	replicate_1_selfish_percent		float
attribute	replicate_1_selfish_percent	actual_range	float	-14.5, 20.6
attribute	replicate_1_selfish_percent	long_name	String	Replicate_1_selfish_percent
attribute	replicate_1_selfish_percent	units	String	percent
variable	replicate_2_selfish_percent		float
attribute	replicate_2_selfish_percent	actual_range	float	-9.0, 30.2
attribute	replicate_2_selfish_percent	long_name	String	Replicate_2_selfish_percent
attribute	replicate_2_selfish_percent	units	String	percent
variable	replicate_3_selfish_percent		float
attribute	replicate_3_selfish_percent	actual_range	float	-7.2, 57.2
attribute	replicate_3_selfish_percent	long_name	String	Replicate_3_selfish_percent
attribute	replicate_3_selfish_percent	units	String	percent
variable	average_selfish_percent		float
attribute	average_selfish_percent	actual_range	float	-9.4, 32.8
attribute	average_selfish_percent	long_name	String	Average_selfish_percent
attribute	average_selfish_percent	units	String	percent
variable	standard_deviation_selfish_percent		float
attribute	standard_deviation_selfish_percent	actual_range	float	0.0, 21.2
attribute	standard_deviation_selfish_percent	long_name	String	Standard_deviation_selfish_percent
attribute	standard_deviation_selfish_percent	units	String	percent
variable	replicate_1_substratecells		float
attribute	replicate_1_substratecells	actual_range	float	-35176.0, 198000.0
attribute	replicate_1_substratecells	long_name	String	Replicate_1_substratecells
attribute	replicate_1_substratecells	units	String	Cells/ml
variable	replicate_2_substratecells		float
attribute	replicate_2_substratecells	actual_range	float	-36944.0, 327666.0
attribute	replicate_2_substratecells	long_name	String	Replicate_2_substratecells
attribute	replicate_2_substratecells	units	String	Cells/ml
variable	replicate_3_substratecells		float
attribute	replicate_3_substratecells	actual_range	float	-35047.0, 353000.0
attribute	replicate_3_substratecells	long_name	String	Replicate_3_substratecells
attribute	replicate_3_substratecells	units	String	Cells/ml
variable	average_substratecells		float
attribute	average_substratecells	actual_range	float	-35024.0, 318359.0
attribute	average_substratecells	long_name	String	Average_substratecells
attribute	average_substratecells	units	String	Cells/ml
variable	standard_deviation_substratecells		float
attribute	standard_deviation_substratecells	actual_range	float	0.0, 173772.2
attribute	standard_deviation_substratecells	long_name	String	Standard_deviation_substratecells
attribute	standard_deviation_substratecells	units	String	Cells/ml
variable	replicate_1_cells		float
attribute	replicate_1_cells	actual_range	float	11100.0, 3370000.0
attribute	replicate_1_cells	long_name	String	Replicate_1_cells
attribute	replicate_1_cells	units	String	Cells/ml
variable	replicate_2_cells		float
attribute	replicate_2_cells	actual_range	float	0.0, 2570000.0
attribute	replicate_2_cells	long_name	String	Replicate_2_cells
attribute	replicate_2_cells	units	String	Cells/ml
variable	replicate_3_cells		float
attribute	replicate_3_cells	actual_range	float	0.0, 2880000.0
attribute	replicate_3_cells	long_name	String	Replicate_3_cells
attribute	replicate_3_cells	units	String	Cells/ml
variable	average_cells		float
attribute	average_cells	actual_range	float	11767.0, 2663333.0
attribute	average_cells	long_name	String	Average_cells
attribute	average_cells	units	String	Cells/ml
variable	standard_deviation_cells		float
attribute	standard_deviation_cells	actual_range	float	0.0, 945797.7
attribute	standard_deviation_cells	long_name	String	Standard_deviation_cells
attribute	standard_deviation_cells	units	String	Cells/ml

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.