bcodmo_dataset_995189_v1

Name: [GTseq KW 2015-2017] - GTseq DNA sequencing of Kelletia kelletii collected in California, USA and Baja, Mexico from 2015 to 2017 (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion)
Creator: BCO-DMO
License: The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[GTseq KW 2015-2017] - GTseq DNA sequencing of Kelletia kelletii collected in California, USA and Baja, Mexico from 2015 to 2017 (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion)		F I M	background			BCO-DMO	bcodmo_dataset_995189_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.995189.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-114.362
attribute	NC_GLOBAL	geospatial_lat_max	double	36.61817
attribute	NC_GLOBAL	geospatial_lat_min	double	27.15326
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-114.362
attribute	NC_GLOBAL	geospatial_lon_min	double	-121.9392
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/995189
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	36.61817
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	27.15326
attribute	NC_GLOBAL	summary	String	Climate-driven warming and changes in major ocean currents enable poleward transport and range expansions of many marine species. Here, we report the population genetic assignment of post-dispersal recruits to pre-dispersal natal source locations for the gastropod Kellet's whelk (Kelletia kelletii), a commercial fisheries species and subtidal predator with top-down food web effects, whose populations have recently undergone climate-driven northward range expansion. This dataset includes sample id, collection site and year, tissue type, length, and extraction information for samples sequenced. Samples were collected between 2015-2017. We genotyped 2,874 individuals from 24 locations across the species' entire biogeographic range using 305 genotyping-in-thousands by sequencing (GT-Seq) loci. Analysis shows a large contribution of 1-year old recruits from the historical range to the expanded range, variable post-settlement survival of those recruits in the expanded range in relation to their natal origin, and that El Niño Southern Oscillation may play a role in long distance dispersal.
attribute	NC_GLOBAL	title	String	[GTseq KW 2015-2017] - GTseq DNA sequencing of Kelletia kelletii collected in California, USA and Baja, Mexico from 2015 to 2017 (Collaborative Research: RUI: Combined spatial and temporal analyses of population connectivity during a northern range expansion)
attribute	NC_GLOBAL	Westernmost_Easting	double	-121.9392
variable	CLNo		int
attribute	CLNo	actual_range	int	1, 239
attribute	CLNo	long_name	String	Clno
attribute	CLNo	units	String	unitless
variable	CapLabel		String
attribute	CapLabel	long_name	String	Caplabel
attribute	CapLabel	units	String	unitless
variable	SiteDescription		String
attribute	SiteDescription	long_name	String	Sitedescription
attribute	SiteDescription	units	String	unitless
variable	SiteCode		String
attribute	SiteCode	long_name	String	Sitecode
attribute	SiteCode	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	27.15326, 36.61817
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-121.9392, -114.362
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	SiteCodeLetter_cap		String
attribute	SiteCodeLetter_cap	long_name	String	Sitecodeletter_cap
attribute	SiteCodeLetter_cap	units	String	unitless
variable	Whelk_ID		String
attribute	Whelk_ID	long_name	String	Whelk_id
attribute	Whelk_ID	units	String	unitless
variable	TissueType		String
attribute	TissueType	long_name	String	Tissuetype
attribute	TissueType	units	String	unitless
variable	Year		int
attribute	Year	actual_range	int	2015, 2017
attribute	Year	long_name	String	Year
attribute	Year	units	String	unitless
variable	ExtractionCap		String
attribute	ExtractionCap	long_name	String	Extractioncap
attribute	ExtractionCap	units	String	unitless
variable	DateOfExtraction		String
attribute	DateOfExtraction	long_name	String	Dateofextraction
attribute	DateOfExtraction	units	String	unitless
variable	PerformedBy		int
attribute	PerformedBy	actual_range	int	1, 6
attribute	PerformedBy	long_name	String	Performedby
attribute	PerformedBy	units	String	unitless
variable	OriginalCalculatedConcentration		float
attribute	OriginalCalculatedConcentration	actual_range	float	0.0, 1000.0
attribute	OriginalCalculatedConcentration	long_name	String	Originalcalculatedconcentration
attribute	OriginalCalculatedConcentration	units	String	ng/ul
variable	Elution_TEBuffer		int
attribute	Elution_TEBuffer	actual_range	int	100, 200
attribute	Elution_TEBuffer	long_name	String	Elution_tebuffer
attribute	Elution_TEBuffer	units	String	microliters (uL)
variable	DNAYield_ug		float
attribute	DNAYield_ug	actual_range	float	0.0, 95.0
attribute	DNAYield_ug	long_name	String	Dnayield_ug
attribute	DNAYield_ug	units	String	micrograms (ug)
variable	Measurement_mm		float
attribute	Measurement_mm	actual_range	float	11.67, 37.56
attribute	Measurement_mm	long_name	String	Measurement_mm
attribute	Measurement_mm	units	String	millimeters (mm)
variable	GTseq_Sample		String
attribute	GTseq_Sample	long_name	String	Gtseq_sample
attribute	GTseq_Sample	units	String	unitless
variable	GTseq_Raw_Reads		int
attribute	GTseq_Raw_Reads	actual_range	int	11, 220839
attribute	GTseq_Raw_Reads	long_name	String	Gtseq_raw_reads
attribute	GTseq_Raw_Reads	units	String	unitless
variable	GTseq_On_Target_Reads		int
attribute	GTseq_On_Target_Reads	actual_range	int	3, 99535
attribute	GTseq_On_Target_Reads	long_name	String	Gtseq_on_target_reads
attribute	GTseq_On_Target_Reads	units	String	unitless
variable	GTseq_Percent_On_Target		float
attribute	GTseq_Percent_On_Target	actual_range	float	0.06, 78.8
attribute	GTseq_Percent_On_Target	long_name	String	Gtseq_percent_on_target
attribute	GTseq_Percent_On_Target	units	String	percent (%)
variable	GTseq_Percent_GT		float
attribute	GTseq_Percent_GT	actual_range	float	0.0, 97.05
attribute	GTseq_Percent_GT	long_name	String	Gtseq_percent_gt
attribute	GTseq_Percent_GT	units	String	percent (%)
variable	GTseq_IFI		float
attribute	GTseq_IFI	actual_range	float	0.0, 37.5
attribute	GTseq_IFI	long_name	String	Gtseq_ifi
attribute	GTseq_IFI	units	String	unitless
variable	GTseq_Sample_reprep		String
attribute	GTseq_Sample_reprep	long_name	String	Gtseq_sample_reprep
attribute	GTseq_Sample_reprep	units	String	unitless
variable	GTseq_Raw_Reads_reprep		int
attribute	GTseq_Raw_Reads_reprep	actual_range	int	0, 273498
attribute	GTseq_Raw_Reads_reprep	long_name	String	Gtseq_raw_reads_reprep
attribute	GTseq_Raw_Reads_reprep	units	String	count
variable	GTseq_On_Target_Reads_reprep		int
attribute	GTseq_On_Target_Reads_reprep	actual_range	int	0, 146504
attribute	GTseq_On_Target_Reads_reprep	long_name	String	Gtseq_on_target_reads_reprep
attribute	GTseq_On_Target_Reads_reprep	units	String	count
variable	GTseq_Percent_On_Target_reprep		float
attribute	GTseq_Percent_On_Target_reprep	actual_range	float	0.0, 53.83
attribute	GTseq_Percent_On_Target_reprep	long_name	String	Gtseq_percent_on_target_reprep
attribute	GTseq_Percent_On_Target_reprep	units	String	percent (%)
variable	GTseq_Percent_GT_reprep		float
attribute	GTseq_Percent_GT_reprep	actual_range	float	0.0, 96.72
attribute	GTseq_Percent_GT_reprep	long_name	String	Gtseq_percent_gt_reprep
attribute	GTseq_Percent_GT_reprep	units	String	percent (%)
variable	GTseq_IFI_reprep		float
attribute	GTseq_IFI_reprep	actual_range	float	0.0, 9.21
attribute	GTseq_IFI_reprep	long_name	String	Gtseq_ifi_reprep
attribute	GTseq_IFI_reprep	units	String	unitless
variable	GTseq_Run_reprep		int
attribute	GTseq_Run_reprep	actual_range	int	0, 2
attribute	GTseq_Run_reprep	long_name	String	Gtseq_run_reprep
attribute	GTseq_Run_reprep	units	String	unitless
variable	PoolRADseq		int
attribute	PoolRADseq	actual_range	int	0, 1
attribute	PoolRADseq	long_name	String	Poolradseq
attribute	PoolRADseq	units	String	unitless
variable	Recruit_label		String
attribute	Recruit_label	long_name	String	Recruit_label
attribute	Recruit_label	units	String	unitless
variable	SL_mm		float
attribute	SL_mm	actual_range	float	11.67, 37.56
attribute	SL_mm	long_name	String	Sl_mm
attribute	SL_mm	units	String	millimeters (mm)
variable	Age_year		float
attribute	Age_year	actual_range	float	0.6523274, 2.82318
attribute	Age_year	long_name	String	Age_year
attribute	Age_year	units	String	years
variable	SurveyDate		String
attribute	SurveyDate	long_name	String	Surveydate
attribute	SurveyDate	units	String	unitless
variable	tfert_date		String
attribute	tfert_date	long_name	String	Tfert_date
attribute	tfert_date	units	String	unitless
variable	thatch_date		String
attribute	thatch_date	long_name	String	Thatch_date
attribute	thatch_date	units	String	unitless
variable	tmiddisp_date		String
attribute	tmiddisp_date	long_name	String	Tmiddisp_date
attribute	tmiddisp_date	units	String	unitless
variable	tsettle_date		String
attribute	tsettle_date	long_name	String	Tsettle_date
attribute	tsettle_date	units	String	unitless
variable	Cohort_year		int
attribute	Cohort_year	actual_range	int	2012, 2016
attribute	Cohort_year	long_name	String	Cohort_year
attribute	Cohort_year	units	String	unitless
variable	Region		String
attribute	Region	long_name	String	Region
attribute	Region	units	String	unitless
variable	Recruit_type		String
attribute	Recruit_type	long_name	String	Recruit_type
attribute	Recruit_type	units	String	unitless
variable	Lee_etal		String
attribute	Lee_etal	long_name	String	Lee_etal
attribute	Lee_etal	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.