ERDDAP > info > bcodmo_dataset_998297_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Diopatra SNPs (SRA)] - Decorator worm Diopatra cuprea single nucleotide polymorphism (SNP) genotypes from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)		F   I   M	background			BCO-DMO	bcodmo_dataset_998297_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.998297.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-69.99714
attribute	NC_GLOBAL	geospatial_lat_max	double	42.04647
attribute	NC_GLOBAL	geospatial_lat_min	double	27.4575
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-69.99714
attribute	NC_GLOBAL	geospatial_lon_min	double	-84.51061
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/998297
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	42.04647
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	27.4575
attribute	NC_GLOBAL	summary	String	The decorator worm Diopatra cuprea Bosc, 1802 (Annelid; Polychaete; Onuphidae) is an ecosystem engineer within high-salinity estuaries of the southern and eastern United States. A previous study revealed five morphologically cryptic mitochondrial lineages across its broad geographic distribution. We genotyped single-nucleotide polymorphisms (SNPs) with RADseq. This dataset includes metadata, methods, links to published code and processed data used to generate figures for the results publication Ziegler et al. (2025,doi:10.1007/s00227-025-04613-8) titled "Multiple cryptic lineages and restricted gene flow in the decorator worm Diopatra cuprea." This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1103840.
attribute	NC_GLOBAL	title	String	[Diopatra SNPs (SRA)] - Decorator worm Diopatra cuprea single nucleotide polymorphism (SNP) genotypes from collections in the Gulf of Mexico and eastern United States estuaries from 2009 to 2022 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)
attribute	NC_GLOBAL	Westernmost_Easting	double	-84.51061
variable	year_collected		int
attribute	year_collected	actual_range	int	2009, 2022
attribute	year_collected	long_name	String	Year_collected
attribute	year_collected	units	String	unitless
variable	sample_id		String
attribute	sample_id	long_name	String	Sample_id
attribute	sample_id	units	String	unitless
variable	pop_defined		String
attribute	pop_defined	long_name	String	Pop_defined
attribute	pop_defined	units	String	unitless
variable	geographic_location		String
attribute	geographic_location	long_name	String	Geographic_location
attribute	geographic_location	units	String	unitless
variable	state_name		String
attribute	state_name	long_name	String	State_name
attribute	state_name	units	String	unitless
variable	estuary_local		String
attribute	estuary_local	long_name	String	Estuary_local
attribute	estuary_local	units	String	unitless
variable	mt_haplotype		String
attribute	mt_haplotype	long_name	String	Mt_haplotype
attribute	mt_haplotype	units	String	unitless
variable	mt_hap_group		String
attribute	mt_hap_group	long_name	String	Mt_hap_group
attribute	mt_hap_group	units	String	unitless
variable	mt_hap_subgroup		String
attribute	mt_hap_subgroup	long_name	String	Mt_hap_subgroup
attribute	mt_hap_subgroup	units	String	unitless
variable	collector		String
attribute	collector	long_name	String	Collector
attribute	collector	units	String	unitless
variable	SRA_Run		String
attribute	SRA_Run	long_name	String	Sra_run
attribute	SRA_Run	units	String	unitless
variable	SRA_Study		String
attribute	SRA_Study	long_name	String	Sra_study
attribute	SRA_Study	units	String	unitless
variable	version		int
attribute	version	actual_range	int	1, 1
attribute	version	long_name	String	Version
attribute	version	units	String	unitless
variable	BioSample		String
attribute	BioSample	long_name	String	Biosample
attribute	BioSample	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	27.4575, 42.04647
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Site_lat
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-84.51061, -69.99714
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Site_lon
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	sites_collector		String
attribute	sites_collector	long_name	String	Sites_collector
attribute	sites_collector	units	String	unitless
variable	Assay_Type		String
attribute	Assay_Type	long_name	String	Assay_type
attribute	Assay_Type	units	String	unitless
variable	AvgSpotLen		int
attribute	AvgSpotLen	actual_range	int	84, 86
attribute	AvgSpotLen	long_name	String	Avgspotlen
attribute	AvgSpotLen	units	String	count
variable	Bases		int
attribute	Bases	actual_range	int	2039140, 596123063
attribute	Bases	long_name	String	Bases
attribute	Bases	units	String	count
variable	BioProject		String
attribute	BioProject	long_name	String	Bioproject
attribute	BioProject	units	String	unitless
variable	BioSampleModel		String
attribute	BioSampleModel	long_name	String	Biosamplemodel
attribute	BioSampleModel	units	String	unitless
variable	Bytes		int
attribute	Bytes	actual_range	int	727391, 198421887
attribute	Bytes	long_name	String	Bytes
attribute	Bytes	units	String	bytes
variable	Experiment		String
attribute	Experiment	long_name	String	Experiment
attribute	Experiment	units	String	unitless
variable	Instrument		String
attribute	Instrument	long_name	String	Instrument
attribute	Instrument	units	String	unitless
variable	isolate		int
attribute	isolate	actual_range	int	1, 233
attribute	isolate	long_name	String	Isolate
attribute	isolate	units	String	unitless
variable	isolation_source		String
attribute	isolation_source	long_name	String	Isolation_source
attribute	isolation_source	units	String	unitless
variable	Library_Name		int
attribute	Library_Name	actual_range	int	1, 233
attribute	Library_Name	long_name	String	Library_name
attribute	Library_Name	units	String	unitless
variable	LibraryLayout		String
attribute	LibraryLayout	long_name	String	Librarylayout
attribute	LibraryLayout	units	String	unitless
variable	LibrarySelection		String
attribute	LibrarySelection	long_name	String	Libraryselection
attribute	LibrarySelection	units	String	unitless
variable	LibrarySource		String
attribute	LibrarySource	long_name	String	Librarysource
attribute	LibrarySource	units	String	unitless
variable	Organism		String
attribute	Organism	long_name	String	Organism
attribute	Organism	units	String	unitless
variable	Platform		String
attribute	Platform	long_name	String	Platform
attribute	Platform	units	String	unitless
variable	tissue		String
attribute	tissue	long_name	String	Tissue
attribute	tissue	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.