ERDDAP > info > bcodmo_dataset_998887_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[SAGs from the Pacific Ocean OMZ] - Single-cell amplified genomes (SAGs) collected during CTD casts in the Eastern Tropical Pacific Ocean on R/V Atlantis cruise AT50-08 during February- March 2023 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)		F   I   M	background			BCO-DMO	bcodmo_dataset_998887_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.998887.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-104.9
attribute	NC_GLOBAL	geospatial_lat_max	double	18.8833
attribute	NC_GLOBAL	geospatial_lat_min	double	18.1667
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-104.9
attribute	NC_GLOBAL	geospatial_lon_min	double	-106.2833
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	1000.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	40.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/998887
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	18.8833
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	18.1667
attribute	NC_GLOBAL	summary	String	This dataset describes assembled genomes of single-cell amplified genomes (SAGs) used in Zhao et al., ISME 2025. Water samples were collected during conductivity–temperature–depth (CTD) casts from an oxygen minimum zone in the Eastern Tropical Pacific Ocean, where the SAR11 make up ~20% of the total microbial community, during the R/V Atlantis cruise AT50-08. Sorting was performed on 4 April 2023 (within 2 months from the date the first sample was collected) and SAGs were generated with the modified genomic DNA amplification technique, WGA-Y, which enables a substantially improved average genome recovery from single cells (serviceS-202). In total, 105 SAGs with Cp values<3h were randomly selected for sequencing. Genome assembly and draft annotation were performed by Single Cell Genomics Facility (SCGC), Maine, USA as described in the center's webpage https://scgc.bigelow.org/capabilities/service-description/ and in the Zhao et al., paper. The single-cell amplified genomes are available in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA1124867.
attribute	NC_GLOBAL	title	String	[SAGs from the Pacific Ocean OMZ] - Single-cell amplified genomes (SAGs) collected during CTD casts in the Eastern Tropical Pacific Ocean on R/V Atlantis cruise AT50-08 during February-March 2023 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)
attribute	NC_GLOBAL	Westernmost_Easting	double	-106.2833
variable	SAG_identifier		String
attribute	SAG_identifier	long_name	String	Sag_identifier
attribute	SAG_identifier	units	String	unitless
variable	Station		String
attribute	Station	long_name	String	Station
attribute	Station	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	18.1667, 18.8833
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-106.2833, -104.9
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	depth		int
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	actual_range	int	40, 1000
attribute	depth	axis	String	Z
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	Collection_date		String
attribute	Collection_date	long_name	String	Collection_date
attribute	Collection_date	units	String	unitless
variable	Genome		String
attribute	Genome	long_name	String	Genome
attribute	Genome	units	String	unitless
variable	Clade		String
attribute	Clade	long_name	String	Clade
attribute	Clade	units	String	unitless
variable	Completeness		float
attribute	Completeness	actual_range	float	43.98, 97.59
attribute	Completeness	long_name	String	Completeness
attribute	Completeness	units	String	ranging from 0 to 100%
variable	Contamination		float
attribute	Contamination	actual_range	float	0.0, 7.23
attribute	Contamination	long_name	String	Contamination
attribute	Contamination	units	String	ranging from 0 to 100%
variable	Strain_heterogeneity		int
attribute	Strain_heterogeneity	actual_range	int	0, 100
attribute	Strain_heterogeneity	long_name	String	Strain_heterogeneity
attribute	Strain_heterogeneity	units	String	ranging from 0 to 100%
variable	Experiment_Accession		String
attribute	Experiment_Accession	long_name	String	Experiment_accession
attribute	Experiment_Accession	units	String	unitless
variable	Study_Accession		String
attribute	Study_Accession	long_name	String	Study_accession
attribute	Study_Accession	units	String	unitless
variable	Sample_Accession		String
attribute	Sample_Accession	long_name	String	Sample_accession
attribute	Sample_Accession	units	String	unitless
variable	SAG_ID		String
attribute	SAG_ID	long_name	String	Sag_id
attribute	SAG_ID	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.