bcodmo_dataset_998957_v1

Name: [Metagenome from Gulf of Mexico] - Sample information for the metagenomes from the Gulf of Mexico collected on R/V Endeavor cruise EN509 in May 2012 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)
Creator: BCO-DMO
License: The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Metagenome from Gulf of Mexico] - Sample information for the metagenomes from the Gulf of Mexico collected on R/V Endeavor cruise EN509 in May 2012 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)		F I M	background			BCO-DMO	bcodmo_dataset_998957_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.998957.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-88.4893
attribute	NC_GLOBAL	geospatial_lat_max	double	28.8505
attribute	NC_GLOBAL	geospatial_lat_min	double	26.095
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-88.4893
attribute	NC_GLOBAL	geospatial_lon_min	double	-92.701
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	2107.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	3.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/998957
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	28.8505
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	26.095
attribute	NC_GLOBAL	summary	String	This dataset includes sample information for the metagenomes from the Gulf of Mexico used in the Conrad et al. AEM 2026 study. Water samples were collected during CTD casts from the May 2012 R/V Endeavour cruise EN509 and shotgun metagenomes were sequenced from the surface (~3 meters (m)), the mixed layer (ML; 15-25m), the deep chlorophyll maximum (DCM; 70-90m), below the DCM but above the oxygen minimum zone (OMZ; 100-150m), and the OMZ (200-400m) from three stations in the northwest Gulf of Mexico on an Illumina MiSeq sequencer available at the Molecular Core of Georgia Tech. Raw sequences are available in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA291283.
attribute	NC_GLOBAL	title	String	[Metagenome from Gulf of Mexico] - Sample information for the metagenomes from the Gulf of Mexico collected on R/V Endeavor cruise EN509 in May 2012 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)
attribute	NC_GLOBAL	Westernmost_Easting	double	-92.701
variable	Acession		String
attribute	Acession	long_name	String	Acession
attribute	Acession	units	String	unitless
variable	Sample_Name		String
attribute	Sample_Name	long_name	String	Sample_name
attribute	Sample_Name	units	String	unitless
variable	Vessel		String
attribute	Vessel	long_name	String	Vessel
attribute	Vessel	units	String	unitless
variable	Cruise		String
attribute	Cruise	long_name	String	Cruise
attribute	Cruise	units	String	unitless
variable	Ocean		String
attribute	Ocean	long_name	String	Ocean
attribute	Ocean	units	String	unitless
variable	Date		String
attribute	Date	long_name	String	Date
attribute	Date	units	String	unitless
variable	Year		int
attribute	Year	actual_range	int	2012, 2012
attribute	Year	long_name	String	Year
attribute	Year	units	String	unitless
variable	Month		String
attribute	Month	long_name	String	Month
attribute	Month	units	String	unitless
variable	Day		int
attribute	Day	actual_range	int	2, 30
attribute	Day	long_name	String	Day
attribute	Day	units	String	unitless
variable	Station		int
attribute	Station	actual_range	int	2, 8
attribute	Station	long_name	String	Station
attribute	Station	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	26.095, 28.8505
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-92.701, -88.4893
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	Description		String
attribute	Description	long_name	String	Description
attribute	Description	units	String	unitless
variable	depth		int
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	actual_range	int	3, 2107
attribute	depth	axis	String	Z
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	Temp		float
attribute	Temp	actual_range	float	4.2532, 27.8465
attribute	Temp	long_name	String	Temp
attribute	Temp	units	String	degrees Celsius
variable	Salinity		float
attribute	Salinity	actual_range	float	29.6411, 36.5015
attribute	Salinity	long_name	String	Salinity
attribute	Salinity	units	String	PSU
variable	Density		float
attribute	Density	actual_range	float	18.4198, 27.7314
attribute	Density	long_name	String	Density
attribute	Density	units	String	sigma theta
variable	Fluoresence		float
attribute	Fluoresence	actual_range	float	0.0461, 0.9041
attribute	Fluoresence	long_name	String	Fluoresence
attribute	Fluoresence	units	String	milligrams per cubic meter (mg/m^3)
variable	Oxygen		float
attribute	Oxygen	actual_range	float	109.172, 212.9035
attribute	Oxygen	long_name	String	Oxygen
attribute	Oxygen	units	String	micromolar (uM)
variable	Xmiss		float
attribute	Xmiss	actual_range	float	80.643, 89.137
attribute	Xmiss	long_name	String	Xmiss
attribute	Xmiss	units	String	ranging 0-100%.
variable	Conductivity		float
attribute	Conductivity	actual_range	float	3.342063, 5.707192
attribute	Conductivity	long_name	String	Conductivity
attribute	Conductivity	units	String	Siemens per meter (S/m)
variable	Par		float
attribute	Par	actual_range	float	0.633, 2060.0
attribute	Par	long_name	String	Par
attribute	Par	units	String	micromoles of photons per square meter per second (μmolm^-2s^-1)
variable	Mean_PO4		float
attribute	Mean_PO4	actual_range	float	0.064, 2.112
attribute	Mean_PO4	long_name	String	Mean_po4
attribute	Mean_PO4	units	String	micromolar (uM)
variable	Mean_Si		float
attribute	Mean_Si	actual_range	float	0.816, 27.173
attribute	Mean_Si	long_name	String	Mean_si
attribute	Mean_Si	units	String	micromolar (uM)
variable	Mean_NO3_NO2		float
attribute	Mean_NO3_NO2	actual_range	float	0.0, 34.94
attribute	Mean_NO3_NO2	long_name	String	Mean_no3_no2
attribute	Mean_NO3_NO2	units	String	micromolar (uM)
variable	Sequencing_Effort_Gb		float
attribute	Sequencing_Effort_Gb	actual_range	float	2.91, 17.61
attribute	Sequencing_Effort_Gb	long_name	String	Sequencing_effort_gb
attribute	Sequencing_Effort_Gb	units	String	Giga-basepairs (Gb)
variable	Sequencing_Effort_Bp		int
attribute	Sequencing_Effort_Bp	long_name	String	Sequencing_effort_bp
attribute	Sequencing_Effort_Bp	units	String	Basepairs (Bp)
variable	Metagenome_Reads_GC		float
attribute	Metagenome_Reads_GC	actual_range	float	35.43749, 49.59689
attribute	Metagenome_Reads_GC	long_name	String	Metagenome_reads_gc
attribute	Metagenome_Reads_GC	units	String	ranging 25-75%, typically
variable	Average_Genome_Size		float
attribute	Average_Genome_Size	actual_range	float	1806225.0, 3157446.0
attribute	Average_Genome_Size	long_name	String	Average_genome_size
attribute	Average_Genome_Size	units	String	Mega-basepairs (Mb)
variable	Nonpareil_Diversity		float
attribute	Nonpareil_Diversity	actual_range	float	19.61215, 21.2032
attribute	Nonpareil_Diversity	long_name	String	Nonpareil_diversity
attribute	Nonpareil_Diversity	units	String	ranging 1-30, typically
variable	Diversity_Covered		float
attribute	Diversity_Covered	actual_range	float	46.62, 76.96
attribute	Diversity_Covered	long_name	String	Diversity_covered
attribute	Diversity_Covered	units	String	ranging 0-100%.
variable	Contigs_Assembled		int
attribute	Contigs_Assembled	actual_range	int	21266, 209000
attribute	Contigs_Assembled	long_name	String	Contigs_assembled
attribute	Contigs_Assembled	units	String	integer, number
variable	Assembled_Length		int
attribute	Assembled_Length	actual_range	int	40718750, 520984574
attribute	Assembled_Length	long_name	String	Assembled_length
attribute	Assembled_Length	units	String	Basepairs (Bp)
variable	Assembled_N50		int
attribute	Assembled_N50	actual_range	int	1850, 3235
attribute	Assembled_N50	long_name	String	Assembled_n50
attribute	Assembled_N50	units	String	Basepairs (Bp)
variable	Assembled_GC		float
attribute	Assembled_GC	actual_range	float	36.44104, 49.66048
attribute	Assembled_GC	long_name	String	Assembled_gc
attribute	Assembled_GC	units	String	ranging 25-75%, typically
variable	Predicted_CDS		int
attribute	Predicted_CDS	actual_range	int	52799, 657518
attribute	Predicted_CDS	long_name	String	Predicted_cds
attribute	Predicted_CDS	units	String	integer, number
variable	Reads_Mapping_to_Assembly		float
attribute	Reads_Mapping_to_Assembly	actual_range	float	22.49, 63.42
attribute	Reads_Mapping_to_Assembly	long_name	String	Reads_mapping_to_assembly
attribute	Reads_Mapping_to_Assembly	units	String	ranging 0-100%.
variable	Reads_Mapping_to_rMAGs		float
attribute	Reads_Mapping_to_rMAGs	actual_range	float	8.8, 30.5
attribute	Reads_Mapping_to_rMAGs	long_name	String	Reads_mapping_to_rmags
attribute	Reads_Mapping_to_rMAGs	units	String	ranging 0-100%.

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.