Accessing BCO-DMO data
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Dataset Title:  Seawater data from long-term monitoring sites in St. John, USVI. Subscribe RSS
Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_735117)
Information:  Summary ? | License ? | ISO 19115 | Metadata | Background (external link) | Data Access Form | Files
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Things You Can Do With Your Graphs

Well, you can do anything you want with your graphs, of course. But some things you might not have considered are:

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Date {
    String bcodmo_name "date";
    String description "Date of sampling";
    String long_name "Date";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/";
    String source_name "Date";
    String time_precision "1970-01-01";
    String units "unitless";
  Flume {
    Byte _FillValue 127;
    Byte actual_range 1, 4;
    String bcodmo_name "tank";
    String description "Four flumes were used - two ambient (~ 400 uatm) and two elevated pCO2 (target 1000 uatm)";
    String long_name "Flume";
    String units "unitless";
  Salinity {
    Float32 _FillValue NaN;
    Float32 actual_range 33.6, 36.0;
    String bcodmo_name "sal";
    Float64 colorBarMaximum 37.0;
    Float64 colorBarMinimum 32.0;
    String description "Salinity refers to the salinity for a given flume (parts per thousand)";
    String long_name "Sea Water Practical Salinity";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PSALST01/";
    String units "PSU";
  Temp {
    Float32 _FillValue NaN;
    Float32 actual_range 24.4, 28.0;
    String bcodmo_name "temperature";
    String description "Temp refers to the temperature for a given flume (deg C)";
    String long_name "Temperature";
    String units "Celsius";
  pH {
    Float64 _FillValue NaN;
    Float64 actual_range 7.57, 8.116200837;
    String bcodmo_name "pH";
    Float64 colorBarMaximum 9.0;
    Float64 colorBarMinimum 7.0;
    String description "pH reports the pH for a given flume (Total Scale)";
    String long_name "Sea Water Ph Reported On Total Scale";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PHXXZZXX/";
    String units "pH";
  pCO2 {
    Float64 _FillValue NaN;
    Float64 actual_range 324.3809425, 1505.979826;
    String bcodmo_name "pCO2";
    String description "pCO2 reports the seawater pCO2 for a given flume (uatm)";
    String long_name "P CO2";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/PCO2C101/";
    String units "uatm";
  TA {
    Float32 _FillValue NaN;
    Float32 actual_range 2304.0, 2516.0;
    String bcodmo_name "TALK";
    String description "TA reports total alkalinity for a given flume (umol kgSW-1)";
    String long_name "TA";
    String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/MDMAP014/";
    String units "umol kgSW-1";
  OmegaAragonite {
    Float64 _FillValue NaN;
    Float64 actual_range 1.507536683, 4.128402892;
    String bcodmo_name "OM_ar";
    String description "OmegaAragonite reports the aragonite saturation state for a given flume";
    String long_name "Omega Aragonite";
    String units "umol kgSW-1";
  Paper {
    String bcodmo_name "reference_paper";
    String description "Paper the data were published in";
    String long_name "Paper";
    String units "unitless";
    String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv";
    String acquisition_description "Methodology found in associated publications.";
    String awards_0_award_nid "536317";
    String awards_0_award_number "OCE-1415268";
    String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1415268";
    String awards_0_funder_name "NSF Division of Ocean Sciences";
    String awards_0_funding_acronym "NSF OCE";
    String awards_0_funding_source_nid "355";
    String awards_0_program_manager "David L. Garrison";
    String awards_0_program_manager_nid "50534";
    String awards_1_award_nid "734980";
    String awards_1_award_number "OCE-1637396";
    String awards_1_data_url "https://www.nsf.gov/awardsearch/showAward?AWD_ID=1637396";
    String awards_1_funder_name "NSF Division of Ocean Sciences";
    String awards_1_funding_acronym "NSF OCE";
    String awards_1_funding_source_nid "355";
    String awards_1_program_manager "David L. Garrison";
    String awards_1_program_manager_nid "50534";
    String cdm_data_type "Other";
    String comment 
"Seawater Data 
  P. Edmunds, PI 
  Version 18 September 2018";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_type "institution";
    String creator_url "https://www.bco-dmo.org/";
    String data_source "extract_data_as_tsv version 2.3  19 Dec 2019";
    String date_created "2018-05-04T19:18:06Z";
    String date_modified "2019-03-26T18:45:15Z";
    String defaultDataQuery "&time<now";
    String doi "10.1575/1912/bco-dmo.735117.1";
    String history 
"2022-08-16T05:04:48Z (local files)
2022-08-16T05:04:48Z https://erddap.bco-dmo.org/tabledap/bcodmo_dataset_735117.das";
    String infoUrl "https://www.bco-dmo.org/dataset/735117";
    String institution "BCO-DMO";
    String keywords "aragonite, bco, bco-dmo, biological, carbon, carbon dioxide, chemical, chemistry, co2, data, dataset, date, density, dioxide, dmo, earth, Earth Science > Oceans > Ocean Chemistry > pH, Earth Science > Oceans > Salinity/Density > Salinity, erddap, flume, management, ocean, oceanography, oceans, office, omega, OmegaAragonite, paper, pCO2, practical, preliminary, reported, salinity, scale, science, sea, sea_water_ph_reported_on_total_scale, sea_water_practical_salinity, seawater, Temp, temperature, time, total, water";
    String keywords_vocabulary "GCMD Science Keywords";
    String license "https://www.bco-dmo.org/dataset/735117/license";
    String metadata_source "https://www.bco-dmo.org/api/dataset/735117";
    String param_mapping "{'735117': {}}";
    String parameter_source "https://www.bco-dmo.org/mapserver/dataset/735117/parameters";
    String people_0_affiliation "California State University Northridge";
    String people_0_affiliation_acronym "CSU-Northridge";
    String people_0_person_name "Peter J. Edmunds";
    String people_0_person_nid "51536";
    String people_0_role "Principal Investigator";
    String people_0_role_type "originator";
    String people_1_affiliation "University of Queensland";
    String people_1_person_name "Nicolas R. Evensen";
    String people_1_person_nid "640104";
    String people_1_role "Contact";
    String people_1_role_type "related";
    String people_2_affiliation "Woods Hole Oceanographic Institution";
    String people_2_affiliation_acronym "WHOI BCO-DMO";
    String people_2_person_name "Hannah Ake";
    String people_2_person_nid "650173";
    String people_2_role "BCO-DMO Data Manager";
    String people_2_role_type "related";
    String project "Climate_Coral_Larvae";
    String projects_0_acronym "Climate_Coral_Larvae";
    String projects_0_description 
"Tropical coral reefs face a suite of environmental assaults ranging from anchor damage to the effects of global climate change (GCC). The consequences are evident throughout the tropics, where many coral reefs have lost a substantial fraction of their coral cover in a few decades. Notwithstanding the importance of reducing the impacts of environmental stresses, the only means by which these ecosystems can recover (or simply persist) is through the recruitment of scleractinians, which is a function of successful larval development, delivery, settlement, metamorphosis, and post-settlement events. Despite wide recognition of the importance of these processes, there are few pertinent empirical data, and virtually none that address the mechanisms mediating the success of early coral life stages in a physical environmental varying at multiple spatio-temporal scales.
The objective of this research is to complete one of the first comprehensive ecophysiological analyses of the early life stages of corals through a description of: (1) their functionality under 'normal' conditions, and (2) their response to the main drivers of GCC. These analyses will be completed for 2 species representative of a brooding life history strategy, and the experiments will be completed in two locations, one (Taiwan) that provides unrivalled experience in coral reproductive biology, and superb microcosm facilities, and the other (Moorea), with access to a relatively pristine environment, a well described ecological and oceanographic context (through the MCR-LTER), and the capacity to bring a strong biogeographic contrast to the project. The results of the study will be integrated through modeling to explore the effects of GCC on coral community structure over the next century.
The following publications and data resulted from this project:
2013    Wall CB, Fan TY, Edmunds PJ.  Ocean acidification has no effect on thermal bleaching in the coral Seriatopora caliendrum.  Coral Reefs 33: 119-130.Symbiodinium_Seriatopora photosynthesisSymbiodinium_Seriatopora PI curveSymbiodinium_Seriatopora temp-salinity-lightSymbiodinium_Seriatopora water chemistry- Download complete data for this publication (Excel file)
2013    Wall CB, Edmunds PJ. In situ effects of low pH and elevated HCO3- on juvenile Porites spp. in Moorea, French Polynesia.  Biological Bulletin 225:92-101.
Data at MCR and PANGEA: doi.pangaea.de/10.1594/PANGAEA.833913- Download complete data for this publication (Excel file)
2013    Vivian R Cumbo, Peter J Edmunds, Christopher B Wall, Tung-Yung Fan. Brooded coral larvae differ in their response to high temperature and elevated pCO2 depending on the day of release.  Marine Biology DOI 10.1007/s00227-013-2280-y.
Data also at PANGEA: doi.pangaea.de/10.1594/PANGAEA.831612brooded coral larvae 2 - carbonate chemistrybrooded coral larvae 2 - larval release March 2003-2008brooded coral larvae 2 - respiration_photosyth_mortality- Download complete data for this publication (Excel file)
2013    Edmunds PJ, Cumbo VR, Fan TY. Metabolic costs of larval settlement and metamorphosis in the coral Seriatopora caliendrum under ambient and elevated pCO2.  Journal Experimental Marine Biology and Ecology 443: 33-38 Data also at PANGEA: doi:10.1594/PANGAEA.821644Coral post-settlement physiology- Download complete data for this publication (Excel file)
2013    Aaron M Dufault, Aaron Ninokawa, Lorenzo Bramanti, Vivian R Cumbo, Tung-Yung Fan, Peter J Edmunds.  The role of light in mediating the effects of ocean acidification on coral calcification.  Journal of Experimental Biology 216: 1570-1577.coral-light expt.- PARcoral-light expt.- carbonate chemistrycoral-light expt.- temp_salinitycoral-light expt.- growthcoral-light expt.- proteincoral-light expt.- survival- Download complete data for this publication (Excel file)
2012    Cumbo, VR, Fan TY, Edmunds PJ. Effects of exposure duration on the response of Pocillopora damicornis larvae to elevated temperature and high pCO2.  J Exp Mar Biol Ecol 439: 100-107.
Data is also at PANGEA: doi:10.1594/PANGAEA.823582brooded coral larvae 3 - carbonate chemistrybrooded coral larvae 3 - lightbrooded coral larvae 3 - mortalitybrooded coral larvae 3 - proteinbrooded coral larvae 3 - respiration and proteinbrooded coral larvae 3 - respiration raw databrooded coral larvae 3 - symbiont densitybrooded coral larvae 3 - tank temperature- Download part 1 of data for this publication (Excel file)- Download tank parameters data for this publication (Excel file)
2012    Cumbo, VR, Fan TY, Edmunds PJ.  Physiological development of brooded larvae from two pocilloporid corals in Taiwan.  Marine Biology 159: 2853-2866.brooded coral - carbonate chemistrybrooded coral - releasebrooded coral - respirationbrooded coral - settlement competencybrooded coral - size_Julybrooded coral - size_protein_symbionts_photosynth- Download complete data for this publication (Excel file)
2012    Dufault, Aaron M; Vivian R Cumbo; Tung-Yung Fan; Peter J Edmunds.  Effects of diurnally oscillating pCO2 on the calcification and survival of coral recruits.  Royal Society of London (B) 279: 2951-2958.  doi:10.1098/rspb.2011.2545
Data is also at PANGEA: doi:10.1594/PANGAEA.830185recruit_growth_arearecruit_growth_weightrecruit_seawater_chemistryrecruit_survival- Download complete data for this publication (Excel file)
2011    Edmunds PJ, Cumbo V, Fan TY.  Effects of temperature on the respiration of brooded larvae from tropical reef corals.  Journal of Experimental Biology 214: 2783-2790. CoralLarvae_comparison_respirCoralLarvae_releaseCoralLarvae_respirCoralLarvae_size- Download complete data for this publication (Excel file)";
    String projects_0_end_date "2013-06";
    String projects_0_geolocation "Moorea, French Polynesia; Southern Taiwan; California State University Northridge";
    String projects_0_name "The ecophysiological basis of the response of coral larvae and early life history stages to global climate change";
    String projects_0_project_nid "2235";
    String projects_0_start_date "2009-07";
    String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
    String publisher_type "institution";
    String sourceUrl "(local files)";
    String standard_name_vocabulary "CF Standard Name Table v55";
    String summary "Seawater data from long-term monitoring sites in St. John, USVI.";
    String title "Seawater data from long-term monitoring sites in St. John, USVI.";
    String version "1";
    String xml_source "osprey2erddap.update_xml() v1.3";


Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
For example,
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

ERDDAP, Version 2.02
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