Accessing BCO-DMO data
Brought to you by BCO-DMO
|
|
BCO-DMO ERDDAP
Accessing BCO-DMO data |
log in
Brought to you by BCO-DMO |
| Dataset Title: | [Micro-satellite genotypes 2012] - Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in 2012. (An Integrative Investigation of Population Connectivity Using a Coral Reef Fish) 
|
| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_743594) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Subset
| Files
| Make a graph
|
Attributes {
s {
individual_ID {
String bcodmo_name "sample";
String description "Unique ID assigned to fish";
String long_name "Individual ID";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P02/current/ACYC/";
String units "unitless";
}
site_id {
String bcodmo_name "region";
String description "Region on reef fish was from";
String long_name "Site Id";
String units "unitless";
}
year {
Int16 _FillValue 32767;
Int16 actual_range 2012, 2012;
String bcodmo_name "year";
String description "Year of sampling";
String long_name "Year";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range 16.60208333, 18.0417;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "Latitude for site location";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -88.0758, -87.54221667;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "Longitude for site location";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
Locus1_1419triBA {
Int16 _FillValue 32767;
Int16 actual_range 444, 482;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus1 1419tri BA";
String units "count";
}
Locus1_1419triBB {
Int16 _FillValue 32767;
Int16 actual_range 444, 482;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus1 1419tri BB";
String units "count";
}
Locus2_14528tetYA {
Int16 _FillValue 32767;
Int16 actual_range 251, 318;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus2 14528tet YA";
String units "count";
}
Locus2_14528tetYB {
Int16 _FillValue 32767;
Int16 actual_range 267, 339;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus2 14528tet YB";
String units "count";
}
Locus3_18144triGA {
Int16 _FillValue 32767;
Int16 actual_range 247, 268;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus3 18144tri GA";
String units "count";
}
Locus3_18144triGB {
Int16 _FillValue 32767;
Int16 actual_range 247, 288;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus3 18144tri GB";
String units "count";
}
Locus4_21378triGA {
Int16 _FillValue 32767;
Int16 actual_range 384, 450;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus4 21378tri GA";
String units "count";
}
Locus4_21378triGB {
Int16 _FillValue 32767;
Int16 actual_range 399, 501;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus4 21378tri GB";
String units "count";
}
Locus5_23415tetRA {
Int16 _FillValue 32767;
Int16 actual_range 187, 264;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus5 23415tet RA";
String units "count";
}
Locus5_23415tetRB {
Int16 _FillValue 32767;
Int16 actual_range 208, 280;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus5 23415tet RB";
String units "count";
}
Locus6_23889triBA {
Int16 _FillValue 32767;
Int16 actual_range 372, 413;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus6 23889tri BA";
String units "count";
}
Locus6_23889triBB {
Int16 _FillValue 32767;
Int16 actual_range 379, 429;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus6 23889tri BB";
String units "count";
}
Locus7_25362triGA {
Int16 _FillValue 32767;
Int16 actual_range 212, 280;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus7 25362tri GA";
String units "count";
}
Locus7_25362triGB {
Int16 _FillValue 32767;
Int16 actual_range 218, 296;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus7 25362tri GB";
String units "count";
}
Locus8_25632tetRA {
Int16 _FillValue 32767;
Int16 actual_range 155, 266;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus8 25632tet RA";
String units "count";
}
Locus8_25632tetRB {
Int16 _FillValue 32767;
Int16 actual_range 155, 308;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus8 25632tet RB";
String units "count";
}
Locus9_25745tetBA {
Int16 _FillValue 32767;
Int16 actual_range 124, 159;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus9 25745tet BA";
String units "count";
}
Locus9_25745tetBB {
Int16 _FillValue 32767;
Int16 actual_range 124, 163;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus9 25745tet BB";
String units "count";
}
Locus10_29109tetBA {
Int16 _FillValue 32767;
Int16 actual_range 242, 320;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus10 29109tet BA";
String units "count";
}
Locus10_29109tetBB {
Int16 _FillValue 32767;
Int16 actual_range 251, 346;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus10 29109tet BB";
String units "count";
}
Locus11_6231tetBA {
Int16 _FillValue 32767;
Int16 actual_range 120, 228;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus11 6231tet BA";
String units "count";
}
Locus11_6231tetBB {
Int16 _FillValue 32767;
Int16 actual_range 163, 256;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus11 6231tet BB";
String units "count";
}
Locus12_6266triYA {
Int16 _FillValue 32767;
Int16 actual_range 432, 471;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus12 6266tri YA";
String units "count";
}
Locus12_6266triYB {
Int16 _FillValue 32767;
Int16 actual_range 438, 477;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus12 6266tri YB";
String units "count";
}
Locus13_6326tetYA {
Int16 _FillValue 32767;
Int16 actual_range 175, 202;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus13 6326tet YA";
String units "count";
}
Locus13_6326tetYB {
Int16 _FillValue 32767;
Int16 actual_range 183, 213;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus13 6326tet YB";
String units "count";
}
Locus14_985tetGA {
Int16 _FillValue 32767;
Int16 actual_range 363, 527;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus14 985tet GA";
String units "count";
}
Locus14_985tetGB {
Int16 _FillValue 32767;
Int16 actual_range 367, 527;
String bcodmo_name "count";
String description "Number of repeats in the microsatellite allele.";
String long_name "Locus14 985tet GB";
String units "count";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson";
String acquisition_description
"We collected tissue samples from 300 Elacatinus lori individuals at ten
locations across the Belize barrier reef for population genetic analyses. We
marked the location of each collection site with a Garmin GPSMAP 76Cx unit.
Individuals were caught with slurp guns and we took a small clip from the
caudal fin using scissors. All tissue samples were store in 95% EtOH. Genetic
data were collected based on standard DNA extractions (DNEasy kits, Qiagen),
and PCRs. Further details on all methods can be found in D\\u2019Aloia et al.
(2014), Molecular Ecology.";
String awards_0_award_nid "544434";
String awards_0_award_number "OCE-1260424";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1260424";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "David L. Garrison";
String awards_0_program_manager_nid "50534";
String cdm_data_type "Other";
String comment
"Micro-satellite Genotypes 2012
P. Buston and C. D'Aloia, PIs
Version 16 August 2018";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String date_created "2018-08-16T19:47:12Z";
String date_modified "2019-06-10T15:46:40Z";
String defaultDataQuery "&time<now";
String doi "10.1575/1912/bco-dmo.743594.1";
Float64 Easternmost_Easting -87.54221667;
Float64 geospatial_lat_max 18.0417;
Float64 geospatial_lat_min 16.60208333;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -87.54221667;
Float64 geospatial_lon_min -88.0758;
String geospatial_lon_units "degrees_east";
String history
"2024-11-12T20:22:33Z (local files)
2024-11-12T20:22:33Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_743594.html";
String infoUrl "https://www.bco-dmo.org/dataset/743594";
String institution "BCO-DMO";
String keywords "1419tri, 14528tet, 18144tri, 21378tri, 23415tet, 23889tri, 25362tri, 25632tet, 25745tet, 29109tet, 6231tet, 6266tri, 6326tet, 985tet, bco, bco-dmo, biological, chemical, data, dataset, dmo, erddap, individual, individual_ID, latitude, locus1, locus10, Locus10_29109tetBA, Locus10_29109tetBB, locus11, Locus11_6231tetBA, Locus11_6231tetBB, locus12, Locus12_6266triYA, Locus12_6266triYB, locus13, Locus13_6326tetYA, Locus13_6326tetYB, locus14, Locus14_985tetGA, Locus14_985tetGB, Locus1_1419triBA, Locus1_1419triBB, locus2, Locus2_14528tetYA, Locus2_14528tetYB, locus3, Locus3_18144triGA, Locus3_18144triGB, locus4, Locus4_21378triGA, Locus4_21378triGB, locus5, Locus5_23415tetRA, Locus5_23415tetRB, locus6, Locus6_23889triBA, Locus6_23889triBB, locus7, Locus7_25362triGA, Locus7_25362triGB, locus8, Locus8_25632tetRA, Locus8_25632tetRB, locus9, Locus9_25745tetBA, Locus9_25745tetBB, longitude, management, oceanography, office, preliminary, site, site_id, year";
String license "https://www.bco-dmo.org/dataset/743594/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/743594";
Float64 Northernmost_Northing 18.0417;
String param_mapping "{'743594': {'lat': 'master - latitude', 'lon': 'master - longitude'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/743594/parameters";
String people_0_affiliation "Boston University";
String people_0_affiliation_acronym "BU";
String people_0_person_name "Dr Peter Buston";
String people_0_person_nid "544437";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "Woods Hole Oceanographic Institution";
String people_1_affiliation_acronym "WHOI";
String people_1_person_name "Dr Cassidy C. D'Aloia";
String people_1_person_nid "704789";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "Boston University";
String people_2_affiliation_acronym "BU";
String people_2_person_name "Dr Peter Buston";
String people_2_person_nid "544437";
String people_2_role "Contact";
String people_2_role_type "related";
String people_3_affiliation "Woods Hole Oceanographic Institution";
String people_3_affiliation_acronym "WHOI BCO-DMO";
String people_3_person_name "Hannah Ake";
String people_3_person_nid "650173";
String people_3_role "BCO-DMO Data Manager";
String people_3_role_type "related";
String project "Elacatinus Dispersal I";
String projects_0_acronym "Elacatinus Dispersal I";
String projects_0_description
"Understanding the patterns, causes and consequences of larval dispersal is a major goal of 21st century marine ecology. Patterns of dispersal determine the rates of larval exchange, or connectivity, between populations. Both physical factors (e.g., water movement) and biological factors (e.g., larval behavior) cause variation in population connectivity. Population connectivity, in turn, has major consequences for all aspects of an organism's biology, from individual behavior to metapopulation dynamics, and from evolution within metapopulations to the origin and extinction of species. Further, understanding population connectivity is critical for the design of effective networks of marine reserves, creation of vital tools in conservation, and the development of sustainable fisheries.
Over the last decade, three methods, each of which tells something slightly different, have emerged as leading contenders to provide the greatest insights into population connectivity. First, coupled biophysical models make assumptions regarding water flow, larval behavior and ecology, to predict population connectivity. Second, indirect genetic methods use spatial distributions of allele frequencies to infer population connectivity. Third, direct genetic methods use parentage analyses, tracing recruits to specific adults, to measure population connectivity. Despite advances, lack of integration means that we do not know the predictive skill of biophysical models, or the extent to which patterns of dispersal predict spatial genetic structure. The overall objective of this proposal is to conduct an integrated investigation of population connectivity, using all three methods in one tractable system: the neon goby, Elacatinus lori, on the Belizean Barrier Reef. There are three motives for this choice of study system: i) fourteen highly polymorphic microsatellite loci have been developed, facilitating the assignment of recruits to parents using parentage analyses and the measurement of dispersal; ii) the physical oceanography of the Belizean Barrier Reef is well-studied, facilitating the development and testing of coupled biophysical models; and, iii) E. lori has a relatively small biogeographic range, facilitating analysis of the spatial distribution of allele frequencies throughout its range.
Broader Impacts. The grant will support one postdoc and two graduate students who will be trained in scientific diving, marine fieldwork, population genetics, biophysical modeling, and mathematical modeling, and will gain collaborative research experience. PIs will incorporate research findings in their courses, which cover all these topics. The grant will also broaden participation of under-represented groups by supporting six undergraduates from groups traditionally underrepresented in STEM fields. In each year of the project there will be an All Participants meeting to reinforce the network of participants. A project website will be developed, in English and Spanish, on the theme of larval dispersal and population connectivity. This will include a resource for K-12 marine science educators developed in collaboration with a marine science educator. All PIs will ensure that results are broadly disseminated to the scientific community and general public via appropriate forms of media.";
String projects_0_end_date "2017-02";
String projects_0_geolocation "Belizean Barrier Reef System (16.803 degrees North 88.096 degrees West)";
String projects_0_name "An Integrative Investigation of Population Connectivity Using a Coral Reef Fish";
String projects_0_project_nid "544435";
String projects_0_project_website "http://people.bu.edu/buston/lab/Welcome.html";
String projects_0_start_date "2013-03";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing 16.60208333;
String standard_name_vocabulary "CF Standard Name Table v55";
String subsetVariables "year";
String summary "Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in 2012.";
String title "[Micro-satellite genotypes 2012] - Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in 2012. (An Integrative Investigation of Population Connectivity Using a Coral Reef Fish)";
String version "1";
Float64 Westernmost_Easting -88.0758;
String xml_source "osprey2erddap.update_xml() v1.3";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.