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   set  data   graph     files  public Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in
2012. 		   ?     I   M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_743594

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL access_formats String .htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute NC_GLOBAL acquisition_description String We collected tissue samples from 300 Elacatinus lori individuals at ten
locations across the Belize barrier reef for population genetic analyses. We
marked the location of each collection site with a Garmin GPSMAP 76Cx unit.
Individuals were caught with slurp guns and we took a small clip from the
caudal fin using scissors. All tissue samples were store in 95% EtOH. Genetic
data were collected based on standard DNA extractions (DNEasy kits, Qiagen),
and PCRs. Further details on all methods can be found in D\u2019Aloia et al.
(2014), Molecular Ecology.
attribute NC_GLOBAL awards_0_award_nid String 544434
attribute NC_GLOBAL awards_0_award_number String OCE-1260424
attribute NC_GLOBAL awards_0_data_url String http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1260424 (external link)
attribute NC_GLOBAL awards_0_funder_name String NSF Division of Ocean Sciences
attribute NC_GLOBAL awards_0_funding_acronym String NSF OCE
attribute NC_GLOBAL awards_0_funding_source_nid String 355
attribute NC_GLOBAL awards_0_program_manager String David L. Garrison
attribute NC_GLOBAL awards_0_program_manager_nid String 50534
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL comment String Micro-satellite Genotypes 2012
P. Buston and C. D'Aloia, PIs
Version 16 August 2018
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_type String institution
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL data_source String extract_data_as_tsv version 2.3 19 Dec 2019
attribute NC_GLOBAL date_created String 2018-08-16T19:47:12Z
attribute NC_GLOBAL date_modified String 2019-06-10T15:46:40Z
attribute NC_GLOBAL defaultDataQuery String &time<now
attribute NC_GLOBAL doi String 10.1575/1912/bco-dmo.743594.1
attribute NC_GLOBAL Easternmost_Easting double -87.54221667
attribute NC_GLOBAL geospatial_lat_max double 18.0417
attribute NC_GLOBAL geospatial_lat_min double 16.60208333
attribute NC_GLOBAL geospatial_lat_units String degrees_north
attribute NC_GLOBAL geospatial_lon_max double -87.54221667
attribute NC_GLOBAL geospatial_lon_min double -88.0758
attribute NC_GLOBAL geospatial_lon_units String degrees_east
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/743594 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL keywords String 1419tri, 14528tet, 18144tri, 21378tri, 23415tet, 23889tri, 25362tri, 25632tet, 25745tet, 29109tet, 6231tet, 6266tri, 6326tet, 985tet, bco, bco-dmo, biological, chemical, data, dataset, dmo, erddap, individual, individual_ID, latitude, locus1, locus10, Locus10_29109tetBA, Locus10_29109tetBB, locus11, Locus11_6231tetBA, Locus11_6231tetBB, locus12, Locus12_6266triYA, Locus12_6266triYB, locus13, Locus13_6326tetYA, Locus13_6326tetYB, locus14, Locus14_985tetGA, Locus14_985tetGB, Locus1_1419triBA, Locus1_1419triBB, locus2, Locus2_14528tetYA, Locus2_14528tetYB, locus3, Locus3_18144triGA, Locus3_18144triGB, locus4, Locus4_21378triGA, Locus4_21378triGB, locus5, Locus5_23415tetRA, Locus5_23415tetRB, locus6, Locus6_23889triBA, Locus6_23889triBB, locus7, Locus7_25362triGA, Locus7_25362triGB, locus8, Locus8_25632tetRA, Locus8_25632tetRB, locus9, Locus9_25745tetBA, Locus9_25745tetBB, longitude, management, oceanography, office, preliminary, site, site_id, year
attribute NC_GLOBAL license String https://www.bco-dmo.org/dataset/743594/license (external link)
attribute NC_GLOBAL metadata_source String https://www.bco-dmo.org/api/dataset/743594 (external link)
attribute NC_GLOBAL Northernmost_Northing double 18.0417
attribute NC_GLOBAL param_mapping String {'743594': {'lat': 'master - latitude', 'lon': 'master - longitude'}}
attribute NC_GLOBAL parameter_source String https://www.bco-dmo.org/mapserver/dataset/743594/parameters (external link)
attribute NC_GLOBAL people_0_affiliation String Boston University
attribute NC_GLOBAL people_0_affiliation_acronym String BU
attribute NC_GLOBAL people_0_person_name String Dr Peter Buston
attribute NC_GLOBAL people_0_person_nid String 544437
attribute NC_GLOBAL people_0_role String Principal Investigator
attribute NC_GLOBAL people_0_role_type String originator
attribute NC_GLOBAL people_1_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_1_affiliation_acronym String WHOI
attribute NC_GLOBAL people_1_person_name String Dr Cassidy C. D'Aloia
attribute NC_GLOBAL people_1_person_nid String 704789
attribute NC_GLOBAL people_1_role String Co-Principal Investigator
attribute NC_GLOBAL people_1_role_type String originator
attribute NC_GLOBAL people_2_affiliation String Boston University
attribute NC_GLOBAL people_2_affiliation_acronym String BU
attribute NC_GLOBAL people_2_person_name String Dr Peter Buston
attribute NC_GLOBAL people_2_person_nid String 544437
attribute NC_GLOBAL people_2_role String Contact
attribute NC_GLOBAL people_2_role_type String related
attribute NC_GLOBAL people_3_affiliation String Woods Hole Oceanographic Institution
attribute NC_GLOBAL people_3_affiliation_acronym String WHOI BCO-DMO
attribute NC_GLOBAL people_3_person_name String Hannah Ake
attribute NC_GLOBAL people_3_person_nid String 650173
attribute NC_GLOBAL people_3_role String BCO-DMO Data Manager
attribute NC_GLOBAL people_3_role_type String related
attribute NC_GLOBAL project String Elacatinus Dispersal I
attribute NC_GLOBAL projects_0_acronym String Elacatinus Dispersal I
attribute NC_GLOBAL projects_0_description String Understanding the patterns, causes and consequences of larval dispersal is a major goal of 21st century marine ecology. Patterns of dispersal determine the rates of larval exchange, or connectivity, between populations. Both physical factors (e.g., water movement) and biological factors (e.g., larval behavior) cause variation in population connectivity. Population connectivity, in turn, has major consequences for all aspects of an organism's biology, from individual behavior to metapopulation dynamics, and from evolution within metapopulations to the origin and extinction of species. Further, understanding population connectivity is critical for the design of effective networks of marine reserves, creation of vital tools in conservation, and the development of sustainable fisheries.
Over the last decade, three methods, each of which tells something slightly different, have emerged as leading contenders to provide the greatest insights into population connectivity. First, coupled biophysical models make assumptions regarding water flow, larval behavior and ecology, to predict population connectivity. Second, indirect genetic methods use spatial distributions of allele frequencies to infer population connectivity. Third, direct genetic methods use parentage analyses, tracing recruits to specific adults, to measure population connectivity. Despite advances, lack of integration means that we do not know the predictive skill of biophysical models, or the extent to which patterns of dispersal predict spatial genetic structure. The overall objective of this proposal is to conduct an integrated investigation of population connectivity, using all three methods in one tractable system: the neon goby, Elacatinus lori, on the Belizean Barrier Reef. There are three motives for this choice of study system: i) fourteen highly polymorphic microsatellite loci have been developed, facilitating the assignment of recruits to parents using parentage analyses and the measurement of dispersal; ii) the physical oceanography of the Belizean Barrier Reef is well-studied, facilitating the development and testing of coupled biophysical models; and, iii) E. lori has a relatively small biogeographic range, facilitating analysis of the spatial distribution of allele frequencies throughout its range.
Broader Impacts. The grant will support one postdoc and two graduate students who will be trained in scientific diving, marine fieldwork, population genetics, biophysical modeling, and mathematical modeling, and will gain collaborative research experience. PIs will incorporate research findings in their courses, which cover all these topics. The grant will also broaden participation of under-represented groups by supporting six undergraduates from groups traditionally underrepresented in STEM fields. In each year of the project there will be an All Participants meeting to reinforce the network of participants. A project website will be developed, in English and Spanish, on the theme of larval dispersal and population connectivity. This will include a resource for K-12 marine science educators developed in collaboration with a marine science educator. All PIs will ensure that results are broadly disseminated to the scientific community and general public via appropriate forms of media.
attribute NC_GLOBAL projects_0_end_date String 2017-02
attribute NC_GLOBAL projects_0_geolocation String Belizean Barrier Reef System (16.803 degrees North 88.096 degrees West)
attribute NC_GLOBAL projects_0_name String An Integrative Investigation of Population Connectivity Using a Coral Reef Fish
attribute NC_GLOBAL projects_0_project_nid String 544435
attribute NC_GLOBAL projects_0_project_website String http://people.bu.edu/buston/lab/Welcome.html (external link)
attribute NC_GLOBAL projects_0_start_date String 2013-03
attribute NC_GLOBAL publisher_name String Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute NC_GLOBAL publisher_type String institution
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL Southernmost_Northing double 16.60208333
attribute NC_GLOBAL standard_name_vocabulary String CF Standard Name Table v55
attribute NC_GLOBAL subsetVariables String year
attribute NC_GLOBAL summary String Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in 2012.
attribute NC_GLOBAL title String Microsatellite genotypes and geolocation data from the Belizean Barrier reef collected in 2012.
attribute NC_GLOBAL version String 1
attribute NC_GLOBAL Westernmost_Easting double -88.0758
attribute NC_GLOBAL xml_source String osprey2erddap.update_xml() v1.3
variable individual_ID   String  
attribute individual_ID bcodmo_name String sample
attribute individual_ID description String Unique ID assigned to fish
attribute individual_ID long_name String Individual ID
attribute individual_ID nerc_identifier String https://vocab.nerc.ac.uk/collection/P02/current/ACYC/ (external link)
attribute individual_ID units String unitless
variable site_id   String  
attribute site_id bcodmo_name String region
attribute site_id description String Region on reef fish was from
attribute site_id long_name String Site Id
attribute site_id units String unitless
variable year   short  
attribute year _FillValue short 32767
attribute year actual_range short 2012, 2012
attribute year bcodmo_name String year
attribute year description String Year of sampling
attribute year long_name String Year
attribute year nerc_identifier String https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/ (external link)
attribute year units String unitless
variable latitude   double  
attribute latitude _CoordinateAxisType String Lat
attribute latitude _FillValue double NaN
attribute latitude actual_range double 16.60208333, 18.0417
attribute latitude axis String Y
attribute latitude bcodmo_name String latitude
attribute latitude colorBarMaximum double 90.0
attribute latitude colorBarMinimum double -90.0
attribute latitude description String Latitude for site location
attribute latitude ioos_category String Location
attribute latitude long_name String Latitude
attribute latitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LATX/ (external link)
attribute latitude standard_name String latitude
attribute latitude units String degrees_north
variable longitude   double  
attribute longitude _CoordinateAxisType String Lon
attribute longitude _FillValue double NaN
attribute longitude actual_range double -88.0758, -87.54221667
attribute longitude axis String X
attribute longitude bcodmo_name String longitude
attribute longitude colorBarMaximum double 180.0
attribute longitude colorBarMinimum double -180.0
attribute longitude description String Longitude for site location
attribute longitude ioos_category String Location
attribute longitude long_name String Longitude
attribute longitude nerc_identifier String https://vocab.nerc.ac.uk/collection/P09/current/LONX/ (external link)
attribute longitude standard_name String longitude
attribute longitude units String degrees_east
variable Locus1_1419triBA   short  
attribute Locus1_1419triBA _FillValue short 32767
attribute Locus1_1419triBA actual_range short 444, 482
attribute Locus1_1419triBA bcodmo_name String count
attribute Locus1_1419triBA description String Number of repeats in the microsatellite allele.
attribute Locus1_1419triBA long_name String Locus1 1419tri BA
attribute Locus1_1419triBA units String count
variable Locus1_1419triBB   short  
attribute Locus1_1419triBB _FillValue short 32767
attribute Locus1_1419triBB actual_range short 444, 482
attribute Locus1_1419triBB bcodmo_name String count
attribute Locus1_1419triBB description String Number of repeats in the microsatellite allele.
attribute Locus1_1419triBB long_name String Locus1 1419tri BB
attribute Locus1_1419triBB units String count
variable Locus2_14528tetYA   short  
attribute Locus2_14528tetYA _FillValue short 32767
attribute Locus2_14528tetYA actual_range short 251, 318
attribute Locus2_14528tetYA bcodmo_name String count
attribute Locus2_14528tetYA description String Number of repeats in the microsatellite allele.
attribute Locus2_14528tetYA long_name String Locus2 14528tet YA
attribute Locus2_14528tetYA units String count
variable Locus2_14528tetYB   short  
attribute Locus2_14528tetYB _FillValue short 32767
attribute Locus2_14528tetYB actual_range short 267, 339
attribute Locus2_14528tetYB bcodmo_name String count
attribute Locus2_14528tetYB description String Number of repeats in the microsatellite allele.
attribute Locus2_14528tetYB long_name String Locus2 14528tet YB
attribute Locus2_14528tetYB units String count
variable Locus3_18144triGA   short  
attribute Locus3_18144triGA _FillValue short 32767
attribute Locus3_18144triGA actual_range short 247, 268
attribute Locus3_18144triGA bcodmo_name String count
attribute Locus3_18144triGA description String Number of repeats in the microsatellite allele.
attribute Locus3_18144triGA long_name String Locus3 18144tri GA
attribute Locus3_18144triGA units String count
variable Locus3_18144triGB   short  
attribute Locus3_18144triGB _FillValue short 32767
attribute Locus3_18144triGB actual_range short 247, 288
attribute Locus3_18144triGB bcodmo_name String count
attribute Locus3_18144triGB description String Number of repeats in the microsatellite allele.
attribute Locus3_18144triGB long_name String Locus3 18144tri GB
attribute Locus3_18144triGB units String count
variable Locus4_21378triGA   short  
attribute Locus4_21378triGA _FillValue short 32767
attribute Locus4_21378triGA actual_range short 384, 450
attribute Locus4_21378triGA bcodmo_name String count
attribute Locus4_21378triGA description String Number of repeats in the microsatellite allele.
attribute Locus4_21378triGA long_name String Locus4 21378tri GA
attribute Locus4_21378triGA units String count
variable Locus4_21378triGB   short  
attribute Locus4_21378triGB _FillValue short 32767
attribute Locus4_21378triGB actual_range short 399, 501
attribute Locus4_21378triGB bcodmo_name String count
attribute Locus4_21378triGB description String Number of repeats in the microsatellite allele.
attribute Locus4_21378triGB long_name String Locus4 21378tri GB
attribute Locus4_21378triGB units String count
variable Locus5_23415tetRA   short  
attribute Locus5_23415tetRA _FillValue short 32767
attribute Locus5_23415tetRA actual_range short 187, 264
attribute Locus5_23415tetRA bcodmo_name String count
attribute Locus5_23415tetRA description String Number of repeats in the microsatellite allele.
attribute Locus5_23415tetRA long_name String Locus5 23415tet RA
attribute Locus5_23415tetRA units String count
variable Locus5_23415tetRB   short  
attribute Locus5_23415tetRB _FillValue short 32767
attribute Locus5_23415tetRB actual_range short 208, 280
attribute Locus5_23415tetRB bcodmo_name String count
attribute Locus5_23415tetRB description String Number of repeats in the microsatellite allele.
attribute Locus5_23415tetRB long_name String Locus5 23415tet RB
attribute Locus5_23415tetRB units String count
variable Locus6_23889triBA   short  
attribute Locus6_23889triBA _FillValue short 32767
attribute Locus6_23889triBA actual_range short 372, 413
attribute Locus6_23889triBA bcodmo_name String count
attribute Locus6_23889triBA description String Number of repeats in the microsatellite allele.
attribute Locus6_23889triBA long_name String Locus6 23889tri BA
attribute Locus6_23889triBA units String count
variable Locus6_23889triBB   short  
attribute Locus6_23889triBB _FillValue short 32767
attribute Locus6_23889triBB actual_range short 379, 429
attribute Locus6_23889triBB bcodmo_name String count
attribute Locus6_23889triBB description String Number of repeats in the microsatellite allele.
attribute Locus6_23889triBB long_name String Locus6 23889tri BB
attribute Locus6_23889triBB units String count
variable Locus7_25362triGA   short  
attribute Locus7_25362triGA _FillValue short 32767
attribute Locus7_25362triGA actual_range short 212, 280
attribute Locus7_25362triGA bcodmo_name String count
attribute Locus7_25362triGA description String Number of repeats in the microsatellite allele.
attribute Locus7_25362triGA long_name String Locus7 25362tri GA
attribute Locus7_25362triGA units String count
variable Locus7_25362triGB   short  
attribute Locus7_25362triGB _FillValue short 32767
attribute Locus7_25362triGB actual_range short 218, 296
attribute Locus7_25362triGB bcodmo_name String count
attribute Locus7_25362triGB description String Number of repeats in the microsatellite allele.
attribute Locus7_25362triGB long_name String Locus7 25362tri GB
attribute Locus7_25362triGB units String count
variable Locus8_25632tetRA   short  
attribute Locus8_25632tetRA _FillValue short 32767
attribute Locus8_25632tetRA actual_range short 155, 266
attribute Locus8_25632tetRA bcodmo_name String count
attribute Locus8_25632tetRA description String Number of repeats in the microsatellite allele.
attribute Locus8_25632tetRA long_name String Locus8 25632tet RA
attribute Locus8_25632tetRA units String count
variable Locus8_25632tetRB   short  
attribute Locus8_25632tetRB _FillValue short 32767
attribute Locus8_25632tetRB actual_range short 155, 308
attribute Locus8_25632tetRB bcodmo_name String count
attribute Locus8_25632tetRB description String Number of repeats in the microsatellite allele.
attribute Locus8_25632tetRB long_name String Locus8 25632tet RB
attribute Locus8_25632tetRB units String count
variable Locus9_25745tetBA   short  
attribute Locus9_25745tetBA _FillValue short 32767
attribute Locus9_25745tetBA actual_range short 124, 159
attribute Locus9_25745tetBA bcodmo_name String count
attribute Locus9_25745tetBA description String Number of repeats in the microsatellite allele.
attribute Locus9_25745tetBA long_name String Locus9 25745tet BA
attribute Locus9_25745tetBA units String count
variable Locus9_25745tetBB   short  
attribute Locus9_25745tetBB _FillValue short 32767
attribute Locus9_25745tetBB actual_range short 124, 163
attribute Locus9_25745tetBB bcodmo_name String count
attribute Locus9_25745tetBB description String Number of repeats in the microsatellite allele.
attribute Locus9_25745tetBB long_name String Locus9 25745tet BB
attribute Locus9_25745tetBB units String count
variable Locus10_29109tetBA   short  
attribute Locus10_29109tetBA _FillValue short 32767
attribute Locus10_29109tetBA actual_range short 242, 320
attribute Locus10_29109tetBA bcodmo_name String count
attribute Locus10_29109tetBA description String Number of repeats in the microsatellite allele.
attribute Locus10_29109tetBA long_name String Locus10 29109tet BA
attribute Locus10_29109tetBA units String count
variable Locus10_29109tetBB   short  
attribute Locus10_29109tetBB _FillValue short 32767
attribute Locus10_29109tetBB actual_range short 251, 346
attribute Locus10_29109tetBB bcodmo_name String count
attribute Locus10_29109tetBB description String Number of repeats in the microsatellite allele.
attribute Locus10_29109tetBB long_name String Locus10 29109tet BB
attribute Locus10_29109tetBB units String count
variable Locus11_6231tetBA   short  
attribute Locus11_6231tetBA _FillValue short 32767
attribute Locus11_6231tetBA actual_range short 120, 228
attribute Locus11_6231tetBA bcodmo_name String count
attribute Locus11_6231tetBA description String Number of repeats in the microsatellite allele.
attribute Locus11_6231tetBA long_name String Locus11 6231tet BA
attribute Locus11_6231tetBA units String count
variable Locus11_6231tetBB   short  
attribute Locus11_6231tetBB _FillValue short 32767
attribute Locus11_6231tetBB actual_range short 163, 256
attribute Locus11_6231tetBB bcodmo_name String count
attribute Locus11_6231tetBB description String Number of repeats in the microsatellite allele.
attribute Locus11_6231tetBB long_name String Locus11 6231tet BB
attribute Locus11_6231tetBB units String count
variable Locus12_6266triYA   short  
attribute Locus12_6266triYA _FillValue short 32767
attribute Locus12_6266triYA actual_range short 432, 471
attribute Locus12_6266triYA bcodmo_name String count
attribute Locus12_6266triYA description String Number of repeats in the microsatellite allele.
attribute Locus12_6266triYA long_name String Locus12 6266tri YA
attribute Locus12_6266triYA units String count
variable Locus12_6266triYB   short  
attribute Locus12_6266triYB _FillValue short 32767
attribute Locus12_6266triYB actual_range short 438, 477
attribute Locus12_6266triYB bcodmo_name String count
attribute Locus12_6266triYB description String Number of repeats in the microsatellite allele.
attribute Locus12_6266triYB long_name String Locus12 6266tri YB
attribute Locus12_6266triYB units String count
variable Locus13_6326tetYA   short  
attribute Locus13_6326tetYA _FillValue short 32767
attribute Locus13_6326tetYA actual_range short 175, 202
attribute Locus13_6326tetYA bcodmo_name String count
attribute Locus13_6326tetYA description String Number of repeats in the microsatellite allele.
attribute Locus13_6326tetYA long_name String Locus13 6326tet YA
attribute Locus13_6326tetYA units String count
variable Locus13_6326tetYB   short  
attribute Locus13_6326tetYB _FillValue short 32767
attribute Locus13_6326tetYB actual_range short 183, 213
attribute Locus13_6326tetYB bcodmo_name String count
attribute Locus13_6326tetYB description String Number of repeats in the microsatellite allele.
attribute Locus13_6326tetYB long_name String Locus13 6326tet YB
attribute Locus13_6326tetYB units String count
variable Locus14_985tetGA   short  
attribute Locus14_985tetGA _FillValue short 32767
attribute Locus14_985tetGA actual_range short 363, 527
attribute Locus14_985tetGA bcodmo_name String count
attribute Locus14_985tetGA description String Number of repeats in the microsatellite allele.
attribute Locus14_985tetGA long_name String Locus14 985tet GA
attribute Locus14_985tetGA units String count
variable Locus14_985tetGB   short  
attribute Locus14_985tetGB _FillValue short 32767
attribute Locus14_985tetGB actual_range short 367, 527
attribute Locus14_985tetGB bcodmo_name String count
attribute Locus14_985tetGB description String Number of repeats in the microsatellite allele.
attribute Locus14_985tetGB long_name String Locus14 985tet GB
attribute Locus14_985tetGB units String count

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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