Accessing BCO-DMO data
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BCO-DMO ERDDAP
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| Dataset Title: | [Dissolved oxygen] - Dissolved oxygen from sediment cores collected on the R/V Nathaniel B. Palmer cruise NBP1601 to the West Antarctic continental shelf in January of 2016 (Organic Carbon Oxidation and Iron Remobilization by West Antarctic Shelf Sediments) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_813140) |
| Range: | longitude = -71.2217 to -62.7317°E, latitude = -67.2417 to -64.1583°N, time = 2016-01-15T11:43:00Z to 2016-01-29T11:42:00Z |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Subset
| Data Access Form
| Files
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![[The graph you specified. Please be patient.]](https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_813140.png?longitude,latitude,Core&time%3E=2016-01-23T00%3A00%3A00Z&time%3C=2016-01-30T00%3A00%3A00Z&.draw=markers&.marker=5%7C5&.color=0x000000&.colorBar=%7C%7C%7C%7C%7C&.bgColor=0xffccccff)
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Attributes {
s {
St_ID {
String bcodmo_name "station";
String description "station ID number";
String long_name "St ID";
String units "unitless";
}
Core {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 12;
String bcodmo_name "sample_type";
String description "core ID number";
String long_name "Core";
String units "unitless";
}
Profile {
String bcodmo_name "sample_descrip";
String description "profile number (a = first profile of a core; b = second profile of the same core)";
String long_name "Profile";
String units "unitless";
}
Sample_Comment {
String bcodmo_name "comment";
String description "Sample comment. \"BW CTD\" = dissolved oxygen measurements made with the CTD sensor ~5-10 meters off the seafloor";
String long_name "Sample Comment";
String units "unitless";
}
Depth {
Float32 _FillValue NaN;
Float32 actual_range -0.4, 13.0;
String bcodmo_name "depth_bsf";
Float64 colorBarMaximum 8000.0;
Float64 colorBarMinimum -8000.0;
String colorBarPalette "TopographyDepth";
String description "depth into the core relative to the sediment-water interface(0 = sediment surface; negative value are in the water overlying the core.";
String long_name "Depth";
String standard_name "depth";
String units "centimeters (cm)";
}
O2 {
String bcodmo_name "dissolved Oxygen";
String description "dissolved oxygen (bd = below analytical detection limit)";
String long_name "O2";
String units "micromolar (uM)";
}
Month {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 1, 1;
String bcodmo_name "month";
String description "month (core collected). Local time (Punta Arenas, UTC-3).";
String long_name "Month";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/MNTHXXXX/";
String units "unitless";
}
Day_Coll {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 15, 29;
String bcodmo_name "day";
String description "day (core collected). Local time (Punta Arenas, UTC-3).";
String long_name "Day Coll";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/DAYXXXXX/";
String units "unitless";
}
Year {
Int16 _FillValue 32767;
Int16 actual_range 2016, 2016;
String bcodmo_name "year";
String description "year (core collected) in format yyyy. Local time (Punta Arenas, UTC-3).";
String long_name "Year";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/YEARXXXX/";
String units "unitless";
}
T_Coll {
String bcodmo_name "time_local";
String description "time core collected in format HH:MM:SS";
String long_name "T Coll";
String units "unitless";
}
Day_Prf {
Byte _FillValue 127;
String _Unsigned "false";
Byte actual_range 15, 29;
String bcodmo_name "day";
String description "day (profiling). Local time (Punta Arenas, UTC-3).";
String long_name "Day Prf";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/DAYXXXXX/";
String units "unitless";
}
T_Prf {
String bcodmo_name "time_local";
String description "time start of profiling in format HH:MM:SS. Local time (Punta Arenas, UTC-3).";
String long_name "T PRF";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float64 _FillValue NaN;
Float64 actual_range -67.2417, -64.1583;
String axis "Y";
String bcodmo_name "latitude";
Float64 colorBarMaximum 90.0;
Float64 colorBarMinimum -90.0;
String description "station latitude, south is negative";
String ioos_category "Location";
String long_name "Latitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LATX/";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float64 _FillValue NaN;
Float64 actual_range -71.2217, -62.7317;
String axis "X";
String bcodmo_name "longitude";
Float64 colorBarMaximum 180.0;
Float64 colorBarMinimum -180.0;
String description "station longitude, west is negative";
String ioos_category "Location";
String long_name "Longitude";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P09/current/LONX/";
String standard_name "longitude";
String units "degrees_east";
}
ISO_DateTime_UTC_Prof {
String bcodmo_name "ISO_DateTime_UTC";
String description "timestamp (UTC) at the start of profiling in ISO 8601 format yyyy-mm-ddTHH:MMZ";
String long_name "ISO Date Time UTC Prof";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/";
String source_name "ISO_DateTime_UTC_Prof";
String time_precision "1970-01-01T00:00:00Z";
String units "unitless";
}
time {
String _CoordinateAxisType "Time";
Float64 actual_range 1.45285818e+9, 1.45406772e+9;
String axis "T";
String bcodmo_name "ISO_DateTime_UTC";
String description "timestamp (UTC) when the time core was collected in ISO 8601 format yyyy-mm-ddTHH:MMZ";
String ioos_category "Time";
String long_name "ISO Date Time UTC Coll";
String nerc_identifier "https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/";
String standard_name "time";
String time_origin "01-JAN-1970 00:00:00";
String time_precision "1970-01-01T00:00:00Z";
String units "seconds since 1970-01-01T00:00:00Z";
}
}
NC_GLOBAL {
String access_formats ".htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson,.odvTxt";
String acquisition_description
"Sediment and pore water collection:
Short sediment cores were collected using a Bowers & Connelly megacorer, a
multiple coring device that can collect ~20-40 cm long sediment cores with
undisturbed sediment surfaces. Megacorer cores were either sectioned for solid
phase analysis, profiled with polarographic microelectrodes to determine
dissolved O2 concentrations, or sectioned in a cold van under N2 for pore
water sample extraction.
Dissolved oxygen analyses:
This was carried out by microprofiling sediment cores in a cold room using
voltametric gold-amalgam (Au/Hg) microelectrodes, as described in detail
elsewhere (Brendel and Luther, 1995; Luther et al., 1998; Luther et al.,
2008). An Analytical Instrument Systems model DLK-100 voltammetric analyzer
was used for all measurements, with profiling carried out using an AIS
computer-controlled automated micromanipulator. Oxygen was determined by
linear-sweep voltammetry (voltage range: -0.1 to -1.8 V, scan rate: 200 mV/s),
and quantified based on the peak height at roughly -0.3 V. Electrodes were
calibrated using a two-point calibration curve with O2 saturated bottom water
and the electrode response in the deeper O2-free zone of the sediments (Cai
and Sayles, 1996). Five scans were carried out at each depth, with the last
three scans typically averaged for concentration determinations.";
String awards_0_award_nid "806863";
String awards_0_award_number "OPP-1551195";
String awards_0_data_url "http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1551195";
String awards_0_funder_name "NSF Division of Ocean Sciences";
String awards_0_funding_acronym "NSF OCE";
String awards_0_funding_source_nid "355";
String awards_0_program_manager "Michael E. Jackson";
String awards_0_program_manager_nid "806862";
String cdm_data_type "Other";
String comment
"Dissolved oxygen
PI: David J Burdige
Data Version 1: 2020-06-08";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_type "institution";
String creator_url "https://www.bco-dmo.org/";
String data_source "extract_data_as_tsv version 2.3 19 Dec 2019";
String dataset_current_state "Final and no updates";
String date_created "2020-05-27T22:05:31Z";
String date_modified "2020-06-17T15:08:41Z";
String defaultDataQuery "&time<now";
String doi "10.26008/1912/bco-dmo.813140.1";
Float64 Easternmost_Easting -62.7317;
Float64 geospatial_lat_max -64.1583;
Float64 geospatial_lat_min -67.2417;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -62.7317;
Float64 geospatial_lon_min -71.2217;
String geospatial_lon_units "degrees_east";
String history
"2024-11-08T06:06:27Z (local files)
2024-11-08T06:06:27Z https://erddap.bco-dmo.org/tabledap/bcodmo_dataset_813140.das";
String infoUrl "https://www.bco-dmo.org/dataset/813140";
String institution "BCO-DMO";
String instruments_0_acronym "Multi Corer";
String instruments_0_dataset_instrument_description "Short sediment cores were collected using a Bowers & Connelly megacorer, a multiple coring device that can collect ~20-40 cm long sediment cores with undisturbed sediment surfaces.";
String instruments_0_dataset_instrument_nid "814582";
String instruments_0_description "The Multi Corer is a benthic coring device used to collect multiple, simultaneous, undisturbed sediment/water samples from the seafloor. Multiple coring tubes with varying sampling capacity depending on tube dimensions are mounted in a frame designed to sample the deep ocean seafloor. For more information, see Barnett et al. (1984) in Oceanologica Acta, 7, pp. 399-408.";
String instruments_0_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/51/";
String instruments_0_instrument_name "Multi Corer";
String instruments_0_instrument_nid "532";
String instruments_0_supplied_name "Bowers & Connelly megacorer";
String instruments_1_acronym "Voltammetry Analyzers";
String instruments_1_dataset_instrument_nid "814583";
String instruments_1_description "Instruments that obtain information about an analyte by applying a potential and measuring the current produced in the analyte.";
String instruments_1_instrument_external_identifier "https://vocab.nerc.ac.uk/collection/L05/current/LAB35/";
String instruments_1_instrument_name "Voltammetry Analyzers";
String instruments_1_instrument_nid "698";
String instruments_1_supplied_name "Analytical Instrument Systems model DLK-100";
String keywords "bco, bco-dmo, biological, chemical, coll, comment, core, data, dataset, date, day, Day_Coll, Day_Prf, depth, dmo, erddap, iso, ISO_DateTime_UTC_Coll, latitude, longitude, management, month, O2, oceanography, office, oxygen, preliminary, prf, prof, profile, sample, Sample_Comment, St_ID, T_Coll, T_Prf, time, year";
String license "https://www.bco-dmo.org/dataset/813140/license";
String metadata_source "https://www.bco-dmo.org/api/dataset/813140";
Float64 Northernmost_Northing -64.1583;
String param_mapping "{'813140': {'Lat': 'master - latitude', 'Lon': 'master - longitude', 'ISO_DateTime_UTC_Coll': 'master - time'}}";
String parameter_source "https://www.bco-dmo.org/mapserver/dataset/813140/parameters";
String people_0_affiliation "Old Dominion University";
String people_0_affiliation_acronym "ODU";
String people_0_person_name "David J Burdige";
String people_0_person_nid "648653";
String people_0_role "Principal Investigator";
String people_0_role_type "originator";
String people_1_affiliation "New England Oceanographic Laboratory";
String people_1_affiliation_acronym "NEOL";
String people_1_person_name "John P Christensen";
String people_1_person_nid "51603";
String people_1_role "Co-Principal Investigator";
String people_1_role_type "originator";
String people_2_affiliation "Woods Hole Oceanographic Institution";
String people_2_affiliation_acronym "WHOI BCO-DMO";
String people_2_person_name "Amber D. York";
String people_2_person_nid "643627";
String people_2_role "BCO-DMO Data Manager";
String people_2_role_type "related";
String project "Antarctic Shelf Sediments";
String projects_0_acronym "Antarctic Shelf Sediments";
String projects_0_description
"NSF Award Abstract:
General Statement:
The continental shelf region west of the Antarctic Peninsula has recently undergone dramatic changes and ecosystem shifts, and the community of organisms that live in, or feed off, the sea floor sediments is being impacted by species invasions from the north. Previous studies of these sediments indicate that this community may consume much more of the regional productivity than previously estimated, suggesting that sediments are a rich and important component of this ecosystem and one that may be ripe for dramatic change. Furthermore, under richer sediment conditions, iron is mobilized and released back to the water column. Since productivity in this ecosystem is thought to be limited by the availability of iron, increased rates of iron release from these sediments could stimulate productivity and promote greater overall ecosystem change. In this research, a variety of sites across the shelf region will be sampled to accurately evaluate the role of sediments in consuming ecosystem productivity and to estimate the current level of iron release from the sediments. This project will provide a baseline set of sediment results that will present a more complete picture of the west Antarctic shelf ecosystem, will allow for comparison with water column measurements and for evaluation of the fundamental workings of this important ecosystem. This is particularly important since high latitude systems may be vulnerable to the effects of climate fluctuations. Both graduate and undergraduate students will be trained. Presentations will be made at scientific meetings, at other universities, and at outreach events. A project web site will present key results to the public and explain how this new information improves understanding of Antarctic ecosystems.
Technical Description of Project:
In order to determine the role of sediments within the west Antarctic shelf ecosystem, this project will determine the rates of sediment organic matter oxidation at a variety of sites across the Palmer Long Term Ecosystem Research (LTER) study region. To estimate the rates of release of iron and manganese from the sediments, these same sites will be sampled for detailed vertical distributions of the concentrations of these metals both in the porewaters and in important mineral phases. Since sediment sampling will be done at LTER sites, the sediment data can be correlated with the rich productivity data set from the LTER. In detail, the project: a) will determine the rates of oxygen consumption, organic carbon oxidation, nutrient release, and iron mobilization by shelf sediments west of the Antarctic Peninsula; b) will investigate the vertical distribution of diagenetic reactions within the sediments; and c) will assess the regional importance of these sediment rates. Sediment cores will be used to determine sediment-water fluxes of dissolved oxygen, total carbon dioxide, nutrients, and the vertical distributions of these dissolved compounds, as well as iron and manganese in the pore waters. Bulk sediment properties of porosity, organic carbon and nitrogen content, carbonate content, biogenic silica content, and multiple species of solid-phase iron, manganese, and sulfur species will also be determined. These measurements will allow determination of total organic carbon oxidation and denitrification rates, and the proportion of aerobic versus anaerobic respiration at each site. Sediment diagenetic modeling will link the processes of organic matter oxidation to metal mobilization. Pore water and solid phase iron and manganese distributions will be used to model iron diagenesis in these sediments and to estimate the iron flux from the sediments to the overlying waters. Finally, the overall regional average and distribution of the sediment processes will be compared with the distributions of seasonally averaged chlorophyll biomass and productivity.";
String projects_0_end_date "2020-02";
String projects_0_geolocation "West Antarctic Continental Shelf";
String projects_0_name "Organic Carbon Oxidation and Iron Remobilization by West Antarctic Shelf Sediments";
String projects_0_project_nid "806864";
String projects_0_start_date "2015-09";
String publisher_name "Biological and Chemical Oceanographic Data Management Office (BCO-DMO)";
String publisher_type "institution";
String sourceUrl "(local files)";
Float64 Southernmost_Northing -67.2417;
String standard_name_vocabulary "CF Standard Name Table v55";
String subsetVariables "Month,Year";
String summary "Dissolved oxygen from sediment cores collected on the R/V Nathaniel B. Palmer cruise NBP1601 to the West Antarctic continental shelf in January of 2016.";
String time_coverage_end "2016-01-29T11:42:00Z";
String time_coverage_start "2016-01-15T11:43:00Z";
String title "[Dissolved oxygen] - Dissolved oxygen from sediment cores collected on the R/V Nathaniel B. Palmer cruise NBP1601 to the West Antarctic continental shelf in January of 2016 (Organic Carbon Oxidation and Iron Remobilization by West Antarctic Shelf Sediments)";
String version "1";
Float64 Westernmost_Easting -71.2217;
String xml_source "osprey2erddap.update_xml() v1.5";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.