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Dataset Title:  [Extracellular reef seawater metabolites from the Jardines de la Reina reef-
system] - Sampling and accession information for extracellular reef seawater
metabolites collected from the Jardines de la Reina reef-system, Cuba in
November of 2017 (Signature exometabolomes of Caribbean corals and influences
on reef picoplankton)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_843270_v1)
Information:  Summary ? | License ? | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 MetaboLights_Study_Number (unitless) ?          "MTBLS1820"    "MTBLS1820"
 Sample_Name (unitless) ?          "JR10B B1"    "pool 8"
 reef (unitless) ?          "JR10B_benthic"    "OR2_surf"
 site (unitless) ?          "JR10B"    "OR2"
 Seawater_collection_date (unitless) ?          "2017-11-05"    "2017-11-20"
 Latitude (degrees_north) ?          20.5065    21.30333
 longitude (degrees_east) ?          -79.59106    -78.38107
  < slider >
 Sample_type (unitless) ?          "seawater_exometabo..."    "seawater_exometabo..."
 Seawater_sampling_location (unitless) ?          "coral reef"    "pooled QC"
 Depth (unitless) ?          "pooled QC"    "surface"
 Replicate (unitless) ?          1    8
 Profiling_mode (unitless) ?          "targeted"    "untargeted"
 Ion_mode (unitless) ?          "negative"    "positive"
 raw_file_name (unitless) ?          "mtab_LauraWeberTSQ..."    "mtab_webber_cuba_l..."
 derived_file_name (unitless) ?          "mtab_webber_cuba_l..."    "mtab_webber_cuba_l..."
 
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more information)

(Documentation / Bypass this form ? )
 
(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  MetaboLights_Study_Number {
    String long_name "Metabolights_study_number";
    String units "unitless";
  }
  Sample_Name {
    String long_name "Sample_name";
    String units "unitless";
  }
  reef {
    String long_name "Reef";
    String units "unitless";
  }
  site {
    String long_name "Site";
    String units "unitless";
  }
  Seawater_collection_date {
    String long_name "Seawater_collection_date";
    String units "unitless";
  }
  Latitude {
    Float32 actual_range 20.5065, 21.30333;
    String long_name "Latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -79.59106, -78.38107;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Sample_type {
    String long_name "Sample_type";
    String units "unitless";
  }
  Seawater_sampling_location {
    String long_name "Seawater_sampling_location";
    String units "unitless";
  }
  Depth {
    String long_name "Depth";
    String units "unitless";
  }
  Replicate {
    Int32 actual_range 1, 8;
    String long_name "Replicate";
    String units "unitless";
  }
  Profiling_mode {
    String long_name "Profiling_mode";
    String units "unitless";
  }
  Ion_mode {
    String long_name "Ion_mode";
    String units "unitless";
  }
  raw_file_name {
    String long_name "Raw_file_name";
    String units "unitless";
  }
  derived_file_name {
    String long_name "Derived_file_name";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.843270.1";
    Float64 Easternmost_Easting -78.38107;
    Float64 geospatial_lon_max -78.38107;
    Float64 geospatial_lon_min -79.59106;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-12-25T00:26:23Z (local files)
2024-12-25T00:26:23Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_843270_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/843270";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"This dataset contains sampling and accession information for extracellular reef seawater metabolites collected from two different depths across 9 different shallow forereefs in the Jardines de la Reina reef-system, Cuba. Reef seawater samples, collected in duplicate per depth and location, were subjected to targeted and untargeted liquid chromatography mass spectrometry (LC-MS) methods in addition to a suite of biogeochemical measurements (see Related Datasets for access to the biochemistry data). Raw and .mzML data files from the LC-MS methods are located at MetaboLights database, using accession number MTBLS1820.(Accessible from https://www.ebi.ac.uk/metabolights/MTBLS1820/). 

These data were published in Weber et al. (2020).";
    String title "[Extracellular reef seawater metabolites from the Jardines de la Reina reef-system] - Sampling and accession information for extracellular reef seawater metabolites collected from the Jardines de la Reina reef-system, Cuba in November of 2017 (Signature exometabolomes of Caribbean corals and influences on reef picoplankton)";
    Float64 Westernmost_Easting -79.59106;
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
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