Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Microbiome dynamics of coral reef and cleanerfish] - Microbiome dynamics of coral reef and cleanerfish from ecological surveys, in situ manipulations, and laboratory experiments conducted from 2020-2021 (Collaborative Research: Cleaning stations as hubs for the maintenance and recovery of microbial diversity on coral reefs.) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_906740_v1) |
| Information: | Summary
| License
| Metadata
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Attributes {
s {
BioProject_accession {
String long_name "Bioproject_accession";
String units "unitless";
}
BioSample_accession {
String long_name "Biosample_accession";
String units "unitless";
}
sample_name {
String long_name "Sample_name";
String units "unitless";
}
SRA_accession {
String long_name "Sra_accession";
String units "unitless";
}
collection_date {
String long_name "Collection_date";
String units "unitless";
}
geo_loc_name {
String long_name "Geo_loc_name";
String units "unitless";
}
host {
String long_name "Host";
String units "unitless";
}
lat {
Float32 actual_range 17.7734, 24.82614;
String long_name "Lat";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -80.81375, -64.8109;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
isolation_source {
String long_name "Isolation_source";
String units "unitless";
}
host_common_name {
String long_name "Host_common_name";
String units "unitless";
}
host_disease {
String long_name "Host_disease";
String units "unitless";
}
host_condition {
String long_name "Host_condition";
String units "unitless";
}
host_coral_cleaner_goby_pretreatment {
String long_name "Host_coral_cleaner_goby_pretreatment";
String units "unitless";
}
host_coral_reef_id {
String long_name "Host_coral_reef_id";
String units "unitless";
}
location_survey_date {
String long_name "Location_survey_date";
String units "unitless";
}
location_mean_total_species {
Float32 actual_range 0.0, 3.666667;
String long_name "Location_mean_total_species";
String units "unitless";
}
FCM_Pro_mL {
Float32 actual_range 1601.96, 255552.0;
String long_name "Fcm_pro_ml";
String units "cells per milliliter (cells/mL)";
}
FCM_Syn_mL {
Float32 actual_range 22466.83, 84431.17;
String long_name "Fcm_syn_ml";
String units "cells per milliliter (cells/mL)";
}
FCM_Peuk_mL {
Float32 actual_range 1181.774, 4136.208;
String long_name "Fcm_peuk_ml";
String units "cells per milliliter (cells/mL)";
}
FCM_Hbac_mL {
Float32 actual_range 593263.6, 914023.3;
String long_name "Fcm_hbac_ml";
String units "cells per milliliter (cells/mL)";
}
NPOC_uM {
Float32 actual_range 70.05134, 257.6029;
String long_name "Npoc_um";
String units "micromolar (uM)";
}
TN_uM {
Float32 actual_range 5.411319, 11.66622;
String long_name "Tn_um";
String units "micromolar (uM)";
}
phosphate {
Float32 actual_range 0.0755, 0.1634;
String long_name "Phosphate";
String units "micromolar (uM)";
}
nitrate_nitrite {
Float32 actual_range 0.0851, 1.259;
String long_name "Nitrate_nitrite";
String units "micromolar (uM)";
}
silicate {
Float32 actual_range 1.0046, 4.2762;
String long_name "Silicate";
String units "micromolar (uM)";
}
NO2 {
Float32 actual_range -0.0049, 0.0764;
String long_name "No2";
String units "micromolar (uM)";
}
ammonium {
Float32 actual_range 0.2235, 0.8573;
String long_name "Ammonium";
String units "micromolar (uM)";
}
nitrate {
Float32 actual_range 0.0881, 1.2039;
String long_name "Nitrate";
String units "micromolar (uM)";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.906740.1";
Float64 Easternmost_Easting -64.8109;
Float64 geospatial_lon_max -64.8109;
Float64 geospatial_lon_min -80.81375;
String geospatial_lon_units "degrees_east";
String history
"2024-12-03T17:32:58Z (local files)
2024-12-03T17:32:58Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_906740_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/906740";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
String sourceUrl "(local files)";
String summary "Coral reefs host some of the most iconic symbiotic interactions in nature and are host to the highest diversity of life on the planet. Cleaning symbiosis, wherein small fish or shrimp remove external parasites and associated microorganisms from specific clients, is common on coral reefs. Sites on the reef occupied by cleaners, or \"cleaning stations\", attract a wide variety of fish species that engage in direct physical contact with the cleaner. In this study, we used a combination of ecological surveys, in situ manipulations, and laboratory experiments to examine the unique features of cleaning stations to understand transfer of bacterial and archaeal symbionts amongst fish and within coral reef environment. We used microbial 16S rRNA gene amplicons, environmental parameters, and other molecular tools to evaluate the dynamics between coral microbiomes, cleanerfish skin microbiomes, and the environment. This dataset contains metadata describing sequenced samples, including sample name, data deposition accession records, and measurements at the time of sample collection.";
String title "[Microbiome dynamics of coral reef and cleanerfish] - Microbiome dynamics of coral reef and cleanerfish from ecological surveys, in situ manipulations, and laboratory experiments conducted from 2020-2021 (Collaborative Research: Cleaning stations as hubs for the maintenance and recovery of microbial diversity on coral reefs.)";
Float64 Westernmost_Easting -80.81375;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.