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Dataset Title:  [Acropora cervicornis white band exposure experiment survival outcomes] -
Acropora cervicornis genomic/trancriptomic sequence accessions with associated
data on tank exposure to white band disease and survival outcomes with corals
collected from Florida, USA and Bocas del Toro, Panama in 2021 (Multi-omic
bases of coral disease resistance)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_922006_v1)
Information:  Summary ? | License ? | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 Tank (untiless) ?          "D1"    "H5"
 Treatment (untiless) ?          "D"    "H"
 Location (untiless) ?          "Florida"    "Panama"
 Genotype (untiless) ?          "B10"    "U98"
 Day_1_AM (untiless) ?          0    1
 Day_1_PM (untiless) ?          0    1
 Day_2_AM (untiless) ?          0    1
 Day_2_PM (untiless) ?          0    1
 Day_3_AM (untiless) ?          0    1
 Day_3_PM (untiless) ?          0    1
 Day_4_AM (untiless) ?          0    1
 Day_4_PM (untiless) ?          0    1
 Day_5_AM (untiless) ?          0    1
 Day_5_PM (untiless) ?          0    1
 Day_6_AM (untiless) ?          0    1
 Day_6_PM (untiless) ?          0    1
 Day_7_AM (untiless) ?          0    1
 
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more information)

(Documentation / Bypass this form ? )
 
(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Tank {
    String long_name "Tank";
    String units "untiless";
  }
  Treatment {
    String long_name "Treatment";
    String units "untiless";
  }
  Location {
    String long_name "Location";
    String units "untiless";
  }
  Genotype {
    String long_name "Genotype";
    String units "untiless";
  }
  Day_1_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_1_am";
    String units "untiless";
  }
  Day_1_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_1_pm";
    String units "untiless";
  }
  Day_2_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_2_am";
    String units "untiless";
  }
  Day_2_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_2_pm";
    String units "untiless";
  }
  Day_3_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_3_am";
    String units "untiless";
  }
  Day_3_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_3_pm";
    String units "untiless";
  }
  Day_4_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_4_am";
    String units "untiless";
  }
  Day_4_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_4_pm";
    String units "untiless";
  }
  Day_5_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_5_am";
    String units "untiless";
  }
  Day_5_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_5_pm";
    String units "untiless";
  }
  Day_6_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_6_am";
    String units "untiless";
  }
  Day_6_PM {
    Int32 actual_range 0, 1;
    String long_name "Day_6_pm";
    String units "untiless";
  }
  Day_7_AM {
    Int32 actual_range 0, 1;
    String long_name "Day_7_am";
    String units "untiless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.922006.1";
    String history 
"2024-11-21T08:40:14Z (local files)
2024-11-21T08:40:14Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_922006_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/922006";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"Genomic data was collected from 96 Acropora cervicornis samples, 48 of which were collected from the Coral restoration foundation nursery in Florida in June 2021 and the other 48 were collected from Bocas del Toro Panama in November 2021. All samples were sequenced using illumina short read sequencing to create whole genome sequencing profiles of the DNA with one of the Florida samples, the K2 genotype, being sequenced using additional Nanopore long reads to assemble and annotate an A. cervicornis genome. All genotypes were used in a disease exposure assay to assess individual genotype disease resistance with a further, 16 colonies from Florida being sequenced at two timepoints across disease exposed and healthy colonies (total 48 sequences) using RNAseq to identify patterns in differential gene expression based on disease resistance.

This dataset includes sample metadata, treatment information, and disease state for corals in the exposure experiment. Sample metadata and accession identifiers for sequences at The National Center for Biotechnology Information (NCBI) are included as a supplemental file.";
    String title "[Acropora cervicornis white band exposure experiment survival outcomes] - Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021 (Multi-omic bases of coral disease resistance)";
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
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