ERDDAP > info > bcodmo_dataset_922006_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Acropora cervicornis white band exposure experiment survival outcomes] - Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021 (Multi-omic bases of coral disease resistance)		M	background			BCO-DMO	bcodmo_dataset_922006_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.922006.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/922006
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	summary	String	Genomic data was collected from 96 Acropora cervicornis samples, 48 of which were collected from the Coral restoration foundation nursery in Florida in June 2021 and the other 48 were collected from Bocas del Toro Panama in November 2021. All samples were sequenced using illumina short read sequencing to create whole genome sequencing profiles of the DNA with one of the Florida samples, the K2 genotype, being sequenced using additional Nanopore long reads to assemble and annotate an A. cervicornis genome. All genotypes were used in a disease exposure assay to assess individual genotype disease resistance with a further, 16 colonies from Florida being sequenced at two timepoints across disease exposed and healthy colonies (total 48 sequences) using RNAseq to identify patterns in differential gene expression based on disease resistance. This dataset includes sample metadata, treatment information, and disease state for corals in the exposure experiment. Sample metadata and accession identifiers for sequences at The National Center for Biotechnology Information (NCBI) are included as a supplemental file.
attribute	NC_GLOBAL	title	String	[Acropora cervicornis white band exposure experiment survival outcomes] - Acropora cervicornis genomic/trancriptomic sequence accessions with associated data on tank exposure to white band disease and survival outcomes with corals collected from Florida, USA and Bocas del Toro, Panama in 2021 (Multi-omic bases of coral disease resistance)
variable	Tank		String
attribute	Tank	long_name	String	Tank
attribute	Tank	units	String	untiless
variable	Treatment		String
attribute	Treatment	long_name	String	Treatment
attribute	Treatment	units	String	untiless
variable	Location		String
attribute	Location	long_name	String	Location
attribute	Location	units	String	untiless
variable	Genotype		String
attribute	Genotype	long_name	String	Genotype
attribute	Genotype	units	String	untiless
variable	Day_1_AM		int
attribute	Day_1_AM	actual_range	int	0, 1
attribute	Day_1_AM	long_name	String	Day_1_am
attribute	Day_1_AM	units	String	untiless
variable	Day_1_PM		int
attribute	Day_1_PM	actual_range	int	0, 1
attribute	Day_1_PM	long_name	String	Day_1_pm
attribute	Day_1_PM	units	String	untiless
variable	Day_2_AM		int
attribute	Day_2_AM	actual_range	int	0, 1
attribute	Day_2_AM	long_name	String	Day_2_am
attribute	Day_2_AM	units	String	untiless
variable	Day_2_PM		int
attribute	Day_2_PM	actual_range	int	0, 1
attribute	Day_2_PM	long_name	String	Day_2_pm
attribute	Day_2_PM	units	String	untiless
variable	Day_3_AM		int
attribute	Day_3_AM	actual_range	int	0, 1
attribute	Day_3_AM	long_name	String	Day_3_am
attribute	Day_3_AM	units	String	untiless
variable	Day_3_PM		int
attribute	Day_3_PM	actual_range	int	0, 1
attribute	Day_3_PM	long_name	String	Day_3_pm
attribute	Day_3_PM	units	String	untiless
variable	Day_4_AM		int
attribute	Day_4_AM	actual_range	int	0, 1
attribute	Day_4_AM	long_name	String	Day_4_am
attribute	Day_4_AM	units	String	untiless
variable	Day_4_PM		int
attribute	Day_4_PM	actual_range	int	0, 1
attribute	Day_4_PM	long_name	String	Day_4_pm
attribute	Day_4_PM	units	String	untiless
variable	Day_5_AM		int
attribute	Day_5_AM	actual_range	int	0, 1
attribute	Day_5_AM	long_name	String	Day_5_am
attribute	Day_5_AM	units	String	untiless
variable	Day_5_PM		int
attribute	Day_5_PM	actual_range	int	0, 1
attribute	Day_5_PM	long_name	String	Day_5_pm
attribute	Day_5_PM	units	String	untiless
variable	Day_6_AM		int
attribute	Day_6_AM	actual_range	int	0, 1
attribute	Day_6_AM	long_name	String	Day_6_am
attribute	Day_6_AM	units	String	untiless
variable	Day_6_PM		int
attribute	Day_6_PM	actual_range	int	0, 1
attribute	Day_6_PM	long_name	String	Day_6_pm
attribute	Day_6_PM	units	String	untiless
variable	Day_7_AM		int
attribute	Day_7_AM	actual_range	int	0, 1
attribute	Day_7_AM	long_name	String	Day_7_am
attribute	Day_7_AM	units	String	untiless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.