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Dataset Title:  [Controlled laboratory study using model organisms Micromonas commoda RCC 299
and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to
picoeukaryote Micromonas commoda (Effects of Climate Change Variables on
Microbial Autotroph-Heterotroph Carbon Flux)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_928039_v1)
Information:  Summary ? | License ? | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 Bottle_ID (unitless) ?          1    40
 Treatment (unitless) ?          "DSS-3"    "axenic"
 Time_h (hour (h)) ?          0    56
 Micromonas_cells_ml (cells per milliliter (cell/ml)) ?          267000    18512000
 Bacteria_cells_ml (cells per milliliter (cell/ml)) ?          436800    2676232
 NH4_uM (micromolar (uM)) ?          1.61    4.45
 NO3_uM (micromolar (uM)) ?          601.3    1061.6
 PO4_uM (micromolar (uM)) ?          0.62    42.31
 NCBI_Sample_ID (unitless) ?          1    16
 Accession (unitless) ?          "SAMN23796896"    "SAMN23796909"
 BioProject (unitless) ?          "PRJNA787291"    "PRJNA787291"
 Organism (unitless) ?          "Micromonas commoda..."    "Stenotrophomonas s..."
 Taxonomy_ID (unitless) ?          "296587"    "mixed"
 Description (unitless) ?          "Micromonas axenic ..."    "Micromonas-Stenotr..."
 
Server-side Functions ?
 distinct() ?
? ("Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.Hover here to see a list of options. Click on an option to select it.")

File type: (more information)

(Documentation / Bypass this form ? )
 
(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Bottle_ID {
    Int32 actual_range 1, 40;
    String long_name "Bottle_id";
    String units "unitless";
  }
  Treatment {
    String long_name "Treatment";
    String units "unitless";
  }
  Time_h {
    Int32 actual_range 0, 56;
    String long_name "Time_h";
    String units "hour (h)";
  }
  Micromonas_cells_ml {
    Int32 actual_range 267000, 18512000;
    String long_name "Micromonas_cells_ml";
    String units "cells per milliliter (cell/ml)";
  }
  Bacteria_cells_ml {
    Int32 actual_range 436800, 2676232;
    String long_name "Bacteria_cells_ml";
    String units "cells per milliliter (cell/ml)";
  }
  NH4_uM {
    Float32 actual_range 1.61, 4.45;
    String long_name "Nh4_um";
    String units "micromolar (uM)";
  }
  NO3_uM {
    Float32 actual_range 601.3, 1061.6;
    String long_name "No3_um";
    String units "micromolar (uM)";
  }
  PO4_uM {
    Float32 actual_range 0.62, 42.31;
    String long_name "Po4_um";
    String units "micromolar (uM)";
  }
  NCBI_Sample_ID {
    Int32 actual_range 1, 16;
    String long_name "Ncbi_sample_id";
    String units "unitless";
  }
  Accession {
    String long_name "Accession";
    String units "unitless";
  }
  BioProject {
    String long_name "Bioproject";
    String units "unitless";
  }
  Organism {
    String long_name "Organism";
    String units "unitless";
  }
  Taxonomy_ID {
    String long_name "Taxonomy_id";
    String units "unitless";
  }
  Description {
    String long_name "Description";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.928039.1";
    String history 
"2024-11-21T08:30:38Z (local files)
2024-11-21T08:30:38Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_928039_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/928039";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary "Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.";
    String title "[Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)";
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
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