bcodmo_dataset_928039_v1

Name: [Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)
Creator: BCO-DMO
License: The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)		M	background			BCO-DMO	bcodmo_dataset_928039_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.928039.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/928039
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	summary	String	Marine biogeochemical cycles are built on interactions between surface ocean microbes, particularly those connecting phytoplankton primary producers to heterotrophic bacteria. However, direct influences of bacteria on phytoplankton physiology are poorly known. In this study, three marine bacteria (Ruegeria pomeroyi DSS-3, Stenotrophomonas sp. SKA14, and Polaribacter dokdonensis MED152) were co-cultured with green alga Micromonas commoda, and the phytoplankter's transcriptome was studied by RNASeq. The presence of each bacterium invoked transcriptomic remodeling by M. commoda after 8 h in co-culture. Some aspects of the algal transcriptomic response were conserved across all three bacteria, while others were restricted to a single bacterium. M. commoda had both rapid and extensive responses to heterotrophic bacteria.
attribute	NC_GLOBAL	title	String	[Controlled laboratory study using model organisms Micromonas commoda RCC 299 and Ruegeria pomeroyi DSS-3] - Bacterial transcriptional response to picoeukaryote Micromonas commoda (Effects of Climate Change Variables on Microbial Autotroph-Heterotroph Carbon Flux)
variable	Bottle_ID		int
attribute	Bottle_ID	actual_range	int	1, 40
attribute	Bottle_ID	long_name	String	Bottle_id
attribute	Bottle_ID	units	String	unitless
variable	Treatment		String
attribute	Treatment	long_name	String	Treatment
attribute	Treatment	units	String	unitless
variable	Time_h		int
attribute	Time_h	actual_range	int	0, 56
attribute	Time_h	long_name	String	Time_h
attribute	Time_h	units	String	hour (h)
variable	Micromonas_cells_ml		int
attribute	Micromonas_cells_ml	actual_range	int	267000, 18512000
attribute	Micromonas_cells_ml	long_name	String	Micromonas_cells_ml
attribute	Micromonas_cells_ml	units	String	cells per milliliter (cell/ml)
variable	Bacteria_cells_ml		int
attribute	Bacteria_cells_ml	actual_range	int	436800, 2676232
attribute	Bacteria_cells_ml	long_name	String	Bacteria_cells_ml
attribute	Bacteria_cells_ml	units	String	cells per milliliter (cell/ml)
variable	NH4_uM		float
attribute	NH4_uM	actual_range	float	1.61, 4.45
attribute	NH4_uM	long_name	String	Nh4_um
attribute	NH4_uM	units	String	micromolar (uM)
variable	NO3_uM		float
attribute	NO3_uM	actual_range	float	601.3, 1061.6
attribute	NO3_uM	long_name	String	No3_um
attribute	NO3_uM	units	String	micromolar (uM)
variable	PO4_uM		float
attribute	PO4_uM	actual_range	float	0.62, 42.31
attribute	PO4_uM	long_name	String	Po4_um
attribute	PO4_uM	units	String	micromolar (uM)
variable	NCBI_Sample_ID		int
attribute	NCBI_Sample_ID	actual_range	int	1, 16
attribute	NCBI_Sample_ID	long_name	String	Ncbi_sample_id
attribute	NCBI_Sample_ID	units	String	unitless
variable	Accession		String
attribute	Accession	long_name	String	Accession
attribute	Accession	units	String	unitless
variable	BioProject		String
attribute	BioProject	long_name	String	Bioproject
attribute	BioProject	units	String	unitless
variable	Organism		String
attribute	Organism	long_name	String	Organism
attribute	Organism	units	String	unitless
variable	Taxonomy_ID		String
attribute	Taxonomy_ID	long_name	String	Taxonomy_id
attribute	Taxonomy_ID	units	String	unitless
variable	Description		String
attribute	Description	long_name	String	Description
attribute	Description	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.