Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_934800_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
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Attributes {
s {
sample_name {
String long_name "Sample_name";
String units "unitless";
}
bioproject_accession {
String long_name "Bioproject_accession";
String units "unitless";
}
bioproject_ncbi {
String long_name "Bioproject_ncbi";
String units "unitless";
}
assay_type {
String long_name "Assay_type";
String units "unitless";
}
organism {
String long_name "Organism";
String units "unitless";
}
isolate_id {
String long_name "Isolate_id";
String units "unitless";
}
isolation_source {
String long_name "Isolation_source";
String units "unitless";
}
collection_date {
String long_name "Collection_date";
String units "unitless";
}
geo_loc_name {
String long_name "Geo_loc_name";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 38.30538, 38.30538;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -123.0515, -123.0515;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
tissue {
String long_name "Tissue";
String units "unitless";
}
biomaterial_provider {
String long_name "Biomaterial_provider";
String units "unitless";
}
collected_by {
String long_name "Collected_by";
String units "unitless";
}
host_tissue_sampled {
String long_name "Host_tissue_sampled";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.934800.1";
Float64 Easternmost_Easting -123.0515;
Float64 geospatial_lat_max 38.30538;
Float64 geospatial_lat_min 38.30538;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -123.0515;
Float64 geospatial_lon_min -123.0515;
String geospatial_lon_units "degrees_east";
String history
"2025-02-02T06:56:38Z (local files)
2025-02-02T06:56:38Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_934800_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/934800";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 38.30538;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 38.30538;
String summary "Outbreaks of sea star wasting (SSW) have killed millions of sea stars across over 20 taxa in the last decade alone, threatening the health and stability of coastal communities around the world. While the causative agent remains unknown, it has recently been postulated that hypoxia exposure may play a dominant role in the onset of SSW. We leveraged a study that subjected ochre sea stars to organic matter amendment in a controlled laboratory setting to induce hypoxia and used a repeated sampling design to collect non-invasive tissue samples from both healthy and wasting individuals. Following tag-based RNAseq (TagSeq), we analyzed differential gene expression (DGE) patterns among and within these individuals sampled strategically throughout the 15-day experiment. Transcriptional profiles reveal a progressive change in gene expression accompanying the advancement of SSW, reflecting a transition from asymptomatic stars to the onset of characteristic SSW lesions that progressively worsen until, in some cases, the star dies of their symptoms. Included in this dataset is the accession information for 89 individual TagSeq samples across 20 individual Pisaster ochraceus sea stars at multiple time points during the study to make them available for subsequent re-evaluation. The sequence data have been deposited into the NCBI archive under BioProject PRJNA1116313 and will be publicly available on 2025-08-01.";
String title "[Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)";
Float64 Westernmost_Easting -123.0515;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.