bcodmo_dataset_934800_v1

Name: [Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)
Creator: BCO-DMO
License: The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)		F I M	background			BCO-DMO	bcodmo_dataset_934800_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.934800.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-123.0515
attribute	NC_GLOBAL	geospatial_lat_max	double	38.30538
attribute	NC_GLOBAL	geospatial_lat_min	double	38.30538
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-123.0515
attribute	NC_GLOBAL	geospatial_lon_min	double	-123.0515
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/934800
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	38.30538
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	38.30538
attribute	NC_GLOBAL	summary	String	Outbreaks of sea star wasting (SSW) have killed millions of sea stars across over 20 taxa in the last decade alone, threatening the health and stability of coastal communities around the world. While the causative agent remains unknown, it has recently been postulated that hypoxia exposure may play a dominant role in the onset of SSW. We leveraged a study that subjected ochre sea stars to organic matter amendment in a controlled laboratory setting to induce hypoxia and used a repeated sampling design to collect non-invasive tissue samples from both healthy and wasting individuals. Following tag-based RNAseq (TagSeq), we analyzed differential gene expression (DGE) patterns among and within these individuals sampled strategically throughout the 15-day experiment. Transcriptional profiles reveal a progressive change in gene expression accompanying the advancement of SSW, reflecting a transition from asymptomatic stars to the onset of characteristic SSW lesions that progressively worsen until, in some cases, the star dies of their symptoms. Included in this dataset is the accession information for 89 individual TagSeq samples across 20 individual Pisaster ochraceus sea stars at multiple time points during the study to make them available for subsequent re-evaluation. The sequence data have been deposited into the NCBI archive under BioProject PRJNA1116313 and will be publicly available on 2025-08-01.
attribute	NC_GLOBAL	title	String	[Three-Prime Tag-Sequencing (3' Tag-Seq) Data for Pisaster ochraceus] - Bioproject accession information on tag-sequence data for Pisaster ochraceus samples collected from Bodega Bay, CA, in July 2019 (Collaborative Proposal: Selection and Genetic Succession in the Intertidal -- Population Genomics of Pisaster ochraceus During a Wasting Disease Outbreak and its Aftermath)
attribute	NC_GLOBAL	Westernmost_Easting	double	-123.0515
variable	sample_name		String
attribute	sample_name	long_name	String	Sample_name
attribute	sample_name	units	String	unitless
variable	bioproject_accession		String
attribute	bioproject_accession	long_name	String	Bioproject_accession
attribute	bioproject_accession	units	String	unitless
variable	bioproject_ncbi		String
attribute	bioproject_ncbi	long_name	String	Bioproject_ncbi
attribute	bioproject_ncbi	units	String	unitless
variable	assay_type		String
attribute	assay_type	long_name	String	Assay_type
attribute	assay_type	units	String	unitless
variable	organism		String
attribute	organism	long_name	String	Organism
attribute	organism	units	String	unitless
variable	isolate_id		String
attribute	isolate_id	long_name	String	Isolate_id
attribute	isolate_id	units	String	unitless
variable	isolation_source		String
attribute	isolation_source	long_name	String	Isolation_source
attribute	isolation_source	units	String	unitless
variable	collection_date		String
attribute	collection_date	long_name	String	Collection_date
attribute	collection_date	units	String	unitless
variable	geo_loc_name		String
attribute	geo_loc_name	long_name	String	Geo_loc_name
attribute	geo_loc_name	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	38.30538, 38.30538
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-123.0515, -123.0515
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	tissue		String
attribute	tissue	long_name	String	Tissue
attribute	tissue	units	String	unitless
variable	biomaterial_provider		String
attribute	biomaterial_provider	long_name	String	Biomaterial_provider
attribute	biomaterial_provider	units	String	unitless
variable	collected_by		String
attribute	collected_by	long_name	String	Collected_by
attribute	collected_by	units	String	unitless
variable	host_tissue_sampled		String
attribute	host_tissue_sampled	long_name	String	Host_tissue_sampled
attribute	host_tissue_sampled	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.