Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_949666_v1) |
| Information: | Summary
| License
| Metadata
| Background
| Files
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Attributes {
s {
sample_name {
String long_name "Sample_name";
String units "unitless";
}
Collection_date {
String long_name "Collection_date";
String units "unitless";
}
SRA_accession {
String long_name "Sra_accession";
String units "unitless";
}
biosample_accession {
String long_name "Biosample_accession";
String units "unitless";
}
embayment {
String long_name "Embayment";
String units "unitless";
}
state {
String long_name "State";
String units "unitless";
}
sex {
String long_name "Sex";
String units "unitless";
}
life_stage {
String long_name "Life_stage";
String units "unitless";
}
run_ID {
String long_name "Run_id";
String units "unitless";
}
sequencing_date {
String long_name "Sequencing_date";
String units "unitless";
}
run_day {
Int32 actual_range 1, 2;
String long_name "Run_day";
String units "days";
}
probe_set {
String long_name "Probe_set";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.949666.1";
String history
"2025-03-01T09:30:23Z (local files)
2025-03-01T09:30:23Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_949666_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/949666";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
String sourceUrl "(local files)";
String summary "This project explores genomic changes in the invasive European green crab (Carcinus maenas), including at a putative inversion polymorphism. To begin to explore structural variation without a reference genome, we conducted semi-targeted longread sequencing of the C. maenas genome using MinION sequencing. This dataset includes individual metadata for 6 raw MinION reads, archived at GenBank's SRA under BioProject PRJNA1171011. This sequencing was conducted using crabs from Massachusetts waters.";
String title "[Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator)";
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.