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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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Grid DAP Data | Sub- set | Table DAP Data | Make A Graph | W M S | Source Data Files | Acces- sible ![]() | Title | Sum- mary | FGDC, ISO, Metadata | Back- ground Info | RSS | E | Institution | Dataset ID |
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data | files | public | [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) | ![]() | M | background![]() | ![]() | ![]() | BCO-DMO | bcodmo_dataset_949666_v1 |
Row Type | Variable Name | Attribute Name | Data Type | Value |
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attribute | NC_GLOBAL | cdm_data_type | String | Other |
attribute | NC_GLOBAL | Conventions | String | COARDS, CF-1.6, ACDD-1.3 |
attribute | NC_GLOBAL | creator_email | String | info at bco-dmo.org |
attribute | NC_GLOBAL | creator_name | String | BCO-DMO |
attribute | NC_GLOBAL | creator_url | String | https://www.bco-dmo.org/![]() |
attribute | NC_GLOBAL | doi | String | 10.26008/1912/bco-dmo.949666.1 |
attribute | NC_GLOBAL | infoUrl | String | https://www.bco-dmo.org/dataset/949666![]() |
attribute | NC_GLOBAL | institution | String | BCO-DMO |
attribute | NC_GLOBAL | license | String | The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information. |
attribute | NC_GLOBAL | sourceUrl | String | (local files) |
attribute | NC_GLOBAL | summary | String | This project explores genomic changes in the invasive European green crab (Carcinus maenas), including at a putative inversion polymorphism. To begin to explore structural variation without a reference genome, we conducted semi-targeted longread sequencing of the C. maenas genome using MinION sequencing. This dataset includes individual metadata for 6 raw MinION reads, archived at GenBank's SRA under BioProject PRJNA1171011. This sequencing was conducted using crabs from Massachusetts waters. |
attribute | NC_GLOBAL | title | String | [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator) |
variable | sample_name | String | ||
attribute | sample_name | long_name | String | Sample_name |
attribute | sample_name | units | String | unitless |
variable | Collection_date | String | ||
attribute | Collection_date | long_name | String | Collection_date |
attribute | Collection_date | units | String | unitless |
variable | SRA_accession | String | ||
attribute | SRA_accession | long_name | String | Sra_accession |
attribute | SRA_accession | units | String | unitless |
variable | biosample_accession | String | ||
attribute | biosample_accession | long_name | String | Biosample_accession |
attribute | biosample_accession | units | String | unitless |
variable | embayment | String | ||
attribute | embayment | long_name | String | Embayment |
attribute | embayment | units | String | unitless |
variable | state | String | ||
attribute | state | long_name | String | State |
attribute | state | units | String | unitless |
variable | sex | String | ||
attribute | sex | long_name | String | Sex |
attribute | sex | units | String | unitless |
variable | life_stage | String | ||
attribute | life_stage | long_name | String | Life_stage |
attribute | life_stage | units | String | unitless |
variable | run_ID | String | ||
attribute | run_ID | long_name | String | Run_id |
attribute | run_ID | units | String | unitless |
variable | sequencing_date | String | ||
attribute | sequencing_date | long_name | String | Sequencing_date |
attribute | sequencing_date | units | String | unitless |
variable | run_day | int | ||
attribute | run_day | actual_range | int | 1, 2 |
attribute | run_day | long_name | String | Run_day |
attribute | run_day | units | String | days |
variable | probe_set | String | ||
attribute | probe_set | long_name | String | Probe_set |
attribute | probe_set | units | String | unitless |
The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.