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     data        files  public [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of
Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug
2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion
front of a highly dispersive marine predator)
   ?            M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_949666_v1

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.949666.1
attribute NC_GLOBAL infoUrl String https://www.bco-dmo.org/dataset/949666 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String This project explores genomic changes in the invasive European green crab (Carcinus maenas), including at a putative inversion polymorphism. To begin to explore structural variation without a reference genome, we conducted semi-targeted longread sequencing of the C. maenas genome using MinION sequencing. This dataset includes individual metadata for 6 raw MinION reads, archived at GenBank's SRA under BioProject PRJNA1171011. This sequencing was conducted using crabs from Massachusetts waters.
attribute NC_GLOBAL title String [Metadata for longread sequencing of Carcinus maenas] - Metadata for longread sequencing of Carcinus maenas collected from Buzzard's Bay, Massachusetts from May 2022 to Aug 2022 (Collaborative Research: Tracking fine-scale selection to temperature at the invasion front of a highly dispersive marine predator)
variable sample_name   String  
attribute sample_name long_name String Sample_name
attribute sample_name units String unitless
variable Collection_date   String  
attribute Collection_date long_name String Collection_date
attribute Collection_date units String unitless
variable SRA_accession   String  
attribute SRA_accession long_name String Sra_accession
attribute SRA_accession units String unitless
variable biosample_accession   String  
attribute biosample_accession long_name String Biosample_accession
attribute biosample_accession units String unitless
variable embayment   String  
attribute embayment long_name String Embayment
attribute embayment units String unitless
variable state   String  
attribute state long_name String State
attribute state units String unitless
variable sex   String  
attribute sex long_name String Sex
attribute sex units String unitless
variable life_stage   String  
attribute life_stage long_name String Life_stage
attribute life_stage units String unitless
variable run_ID   String  
attribute run_ID long_name String Run_id
attribute run_ID units String unitless
variable sequencing_date   String  
attribute sequencing_date long_name String Sequencing_date
attribute sequencing_date units String unitless
variable run_day   int  
attribute run_day actual_range int 1, 2
attribute run_day long_name String Run_day
attribute run_day units String days
variable probe_set   String  
attribute probe_set long_name String Probe_set
attribute probe_set units String unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
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