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Dataset Title:	[Diel multi 'omics] - Diel multi 'omics data from surface ocean microbial community samples collected during Hawaiʻi Diel Sampling (HaDS) in Kāneʻohe Bay and adjacent offshore waters of O'ahu, Hawai'i from December 2020 to August 2021 (From Signatures of Translational Regulation to Outcomes of Natural Selection: Evolution of Marine Microbes in Changing Environments)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_963210_v1)
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
HADS_Universal_Sample_ID (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20201223_H090..."	"HADS_20210820_H090..."
NCBI_BioProject (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"PRJNA1201851"	"PRJNA1201851"
BioSample_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SAMN35028274"	"SAMN46514401"
sampleID_MTX (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
sampleID_TRNA (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
sampleID_MGX (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20201223_H090..."	"HADS_20210820_H090..."
sampleID_HMW (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210819_H210..."
Station (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HP1"	"STO1"
Date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"2020-12-23"	"2021-08-20"
Time_sampled (hh:mm)	!= =~ <= >= = < >		!= =~ <= >= = < >		"0:06"	"9:45"
time (Iso_datetime_utc, UTC)	!= =~ <= >= = < >		!= =~ <= >= = < >		2020-12-23T19:21:00Z	2021-08-20T19:26:00Z
latitude (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		21.43688	21.4829
longitude (degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		-157.8033	-157.7663
Temp (degrees Celsius)	!= =~ <= >= = < >		!= =~ <= >= = < >		"24.91"	"29.37"
Salinity (ppt)	!= =~ <= >= = < >		!= =~ <= >= = < >		33.93	35.19
depth (m)	!= =~ <= >= = < >		!= =~ <= >= = < >		0.116	2.064
pH (pH scale)	!= =~ <= >= = < >		!= =~ <= >= = < >		6.96	8.04
PPFFR (Micromoles of photons per square meter per second (umol/m2/s))	!= =~ <= >= = < >		!= =~ <= >= = < >		0.0	1387.0
PRO_mL (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		26	283087
SYN_mL (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		12093	318829
PEUK_mL (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		1431	33221
HBACT_mL (cells per mL)	!= =~ <= >= = < >		!= =~ <= >= = < >		640666	1932922
chla (micrograms per Liter)	!= =~ <= >= = < >		!= =~ <= >= = < >		"0.1"	"1.8"
Phosphate_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"0.06"	"0.17"
Silicate_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"0.96"	"9.77"
NitrateNitrite_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"0.02"	"1.17"
Ammonia_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"0.04"	"0.78"
DOC_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"104.01"	"97.02"
TN_uM (micromolar (uM))	!= =~ <= >= = < >		!= =~ <= >= = < >		"10.7"	"9.43"
MGX_SRA_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SRR31808379"	"SRR31951251"
MGX_filename (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20201223_H090..."	"HADS_20210820_H090..."
MGX_filename2 (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20201223_H090..."	"HADS_20210820_H090..."
MTX_SRA_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SRR32279196"	"SRR32279254"
MTX_filename (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
MTX_filename2 (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
TRNA_SRA_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SRR32197332"	"SRR32203138"
TRNA_filename (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
TRNA_filename2 (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210820_H090..."
HMW_SRA_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"SRR31805816"	"SRR31805823"
HMW_filename (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"HADS_20210818_H090..."	"HADS_20210819_H210..."

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" HADS_Universal_Sample_ID NCBI_BioProject BioSample_accession sampleID_MTX sampleID_TRNA sampleID_MGX sampleID_HMW Station Date Time_sampled time latitude longitude Temp Salinity depth pH PPFFR PRO_mL SYN_mL PEUK_mL HBACT_mL chla Phosphate_uM Silicate_uM NitrateNitrite_uM Ammonia_uM DOC_uM TN_uM MGX_SRA_accession MGX_filename MGX_filename2 MTX_SRA_accession MTX_filename MTX_filename2 TRNA_SRA_accession TRNA_filename TRNA_filename2 HMW_SRA_accession HMW_filename HADS_Universal_Sample_ID NCBI_BioProject BioSample_accession sampleID_MTX sampleID_TRNA sampleID_MGX sampleID_HMW Station Date Time_sampled time latitude longitude Temp Salinity depth pH PPFFR PRO_mL SYN_mL PEUK_mL HBACT_mL chla Phosphate_uM Silicate_uM NitrateNitrite_uM Ammonia_uM DOC_uM TN_uM MGX_SRA_accession MGX_filename MGX_filename2 MTX_SRA_accession MTX_filename MTX_filename2 TRNA_SRA_accession TRNA_filename TRNA_filename2 HMW_SRA_accession HMW_filename HADS_Universal_Sample_ID NCBI_BioProject BioSample_accession sampleID_MTX sampleID_TRNA sampleID_MGX sampleID_HMW Station Date Time_sampled time latitude longitude Temp Salinity depth pH PPFFR PRO_mL SYN_mL PEUK_mL HBACT_mL chla Phosphate_uM Silicate_uM NitrateNitrite_uM Ammonia_uM DOC_uM TN_uM MGX_SRA_accession MGX_filename MGX_filename2 MTX_SRA_accession MTX_filename MTX_filename2 TRNA_SRA_accession TRNA_filename TRNA_filename2 HMW_SRA_accession HMW_filename HADS_Universal_Sample_ID NCBI_BioProject BioSample_accession sampleID_MTX sampleID_TRNA sampleID_MGX sampleID_HMW Station Date Time_sampled time latitude longitude Temp Salinity depth pH PPFFR PRO_mL SYN_mL PEUK_mL HBACT_mL chla Phosphate_uM Silicate_uM NitrateNitrite_uM Ammonia_uM DOC_uM TN_uM MGX_SRA_accession MGX_filename MGX_filename2 MTX_SRA_accession MTX_filename MTX_filename2 TRNA_SRA_accession TRNA_filename TRNA_filename2 HMW_SRA_accession HMW_filename HADS_Universal_Sample_ID NCBI_BioProject BioSample_accession sampleID_MTX sampleID_TRNA sampleID_MGX sampleID_HMW Station Date Time_sampled time latitude longitude Temp Salinity depth pH PPFFR PRO_mL SYN_mL PEUK_mL HBACT_mL chla Phosphate_uM Silicate_uM NitrateNitrite_uM Ammonia_uM DOC_uM TN_uM MGX_SRA_accession MGX_filename MGX_filename2 MTX_SRA_accession MTX_filename MTX_filename2 TRNA_SRA_accession TRNA_filename TRNA_filename2 HMW_SRA_accession HMW_filename ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  HADS_Universal_Sample_ID {
    String long_name "Hads_universal_sample_id";
    String units "unitless";
  }
  NCBI_BioProject {
    String long_name "Ncbi_bioproject";
    String units "unitless";
  }
  BioSample_accession {
    String long_name "Biosample_accession";
    String units "unitless";
  }
  sampleID_MTX {
    String long_name "Sampleid_mtx";
    String units "unitless";
  }
  sampleID_TRNA {
    String long_name "Sampleid_trna";
    String units "unitless";
  }
  sampleID_MGX {
    String long_name "Sampleid_mgx";
    String units "unitless";
  }
  sampleID_HMW {
    String long_name "Sampleid_hmw";
    String units "unitless";
  }
  Station {
    String long_name "Station";
    String units "unitless";
  }
  Date {
    String long_name "Date";
    String units "unitless";
  }
  Time_sampled {
    String long_name "Time_sampled";
    String units "hh:mm";
  }
  time {
    String _CoordinateAxisType "Time";
    Float64 actual_range 1.60875126e+9, 1.62948756e+9;
    String axis "T";
    String ioos_category "Time";
    String long_name "Iso_datetime_utc";
    String standard_name "time";
    String time_origin "01-JAN-1970 00:00:00";
    String units "seconds since 1970-01-01T00:00:00Z";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 21.43688, 21.4829;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -157.8033, -157.7663;
    String axis "X";
    String ioos_category "Location";
    String long_name "Longitude";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Temp {
    String long_name "Temp";
    String units "degrees Celsius";
  }
  Salinity {
    Float32 actual_range 33.93, 35.19;
    String long_name "Salinity";
    String units "ppt";
  }
  depth {
    String _CoordinateAxisType "Height";
    String _CoordinateZisPositive "down";
    Float32 actual_range 0.116, 2.064;
    String axis "Z";
    String ioos_category "Location";
    String long_name "Depth";
    String positive "down";
    String standard_name "depth";
    String units "m";
  }
  pH {
    Float32 actual_range 6.96, 8.04;
    String long_name "Ph";
    String units "pH scale";
  }
  PPFFR {
    Float32 actual_range 0.0, 1387.0;
    String long_name "Ppffr";
    String units "Micromoles of photons per square meter per second (umol/m2/s)";
  }
  PRO_mL {
    Int32 actual_range 26, 283087;
    String long_name "Pro_ml";
    String units "cells per mL";
  }
  SYN_mL {
    Int32 actual_range 12093, 318829;
    String long_name "Syn_ml";
    String units "cells per mL";
  }
  PEUK_mL {
    Int32 actual_range 1431, 33221;
    String long_name "Peuk_ml";
    String units "cells per mL";
  }
  HBACT_mL {
    Int32 actual_range 640666, 1932922;
    String long_name "Hbact_ml";
    String units "cells per mL";
  }
  chla {
    String long_name "Chla";
    String units "micrograms per Liter";
  }
  Phosphate_uM {
    String long_name "Phosphate_um";
    String units "micromolar (uM)";
  }
  Silicate_uM {
    String long_name "Silicate_um";
    String units "micromolar (uM)";
  }
  NitrateNitrite_uM {
    String long_name "Nitratenitrite_um";
    String units "micromolar (uM)";
  }
  Ammonia_uM {
    String long_name "Ammonia_um";
    String units "micromolar (uM)";
  }
  DOC_uM {
    String long_name "Doc_um";
    String units "micromolar (uM)";
  }
  TN_uM {
    String long_name "Tn_um";
    String units "micromolar (uM)";
  }
  MGX_SRA_accession {
    String long_name "Mgx_sra_accession";
    String units "unitless";
  }
  MGX_filename {
    String long_name "Mgx_filename";
    String units "unitless";
  }
  MGX_filename2 {
    String long_name "Mgx_filename2";
    String units "unitless";
  }
  MTX_SRA_accession {
    String long_name "Mtx_sra_accession";
    String units "unitless";
  }
  MTX_filename {
    String long_name "Mtx_filename";
    String units "unitless";
  }
  MTX_filename2 {
    String long_name "Mtx_filename2";
    String units "unitless";
  }
  TRNA_SRA_accession {
    String long_name "Trna_sra_accession";
    String units "unitless";
  }
  TRNA_filename {
    String long_name "Trna_filename";
    String units "unitless";
  }
  TRNA_filename2 {
    String long_name "Trna_filename2";
    String units "unitless";
  }
  HMW_SRA_accession {
    String long_name "Hmw_sra_accession";
    String units "unitless";
  }
  HMW_filename {
    String long_name "Hmw_filename";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String defaultDataQuery "&time<now";
    String doi "10.26008/1912/bco-dmo.963210.1";
    Float64 Easternmost_Easting -157.7663;
    Float64 geospatial_lat_max 21.4829;
    Float64 geospatial_lat_min 21.43688;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -157.7663;
    Float64 geospatial_lon_min -157.8033;
    String geospatial_lon_units "degrees_east";
    Float64 geospatial_vertical_max 2.064;
    Float64 geospatial_vertical_min 0.116;
    String geospatial_vertical_positive "down";
    String geospatial_vertical_units "m";
    String history 
"2025-06-24T08:28:34Z (local files)
2025-06-24T08:28:34Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_963210_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/963210";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 21.4829;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 21.43688;
    String summary 
"This dataset contains biogeochemical data, sampling information, and genetic accession identifiers for the Hawaiʻi Diel Sampling (HaDS) survey in Kāneʻohe Bay and adjacent offshore waters of O'ahu, Hawai'i from December 2020 to August 2021.

Study description:

Here, we present data from the Hawaiʻi Diel Sampling (HaDS) survey, which represents a high-resolution sampling of surface ocean microbial communities every 1.5 hours for 48 hours across two environments: Kāneʻohe Bay on the windward coast of Oʻahu, Hawaiʻi, and the adjacent offshore. At both the coastal Kāneʻohe Bay station (HP1) and the adjacent offshore station (STO1), we sampled at 33 time-points across 48 hours in August 2021, and subsequently produced 59 metatranscriptomes, 65 short-read metagenomes, 8 long-read metagenomes, and 66 metaepitranscriptomes. We also generated four deeply-sequenced short-read metagenomes from samples collected in the late fall and spring prior to HaDS through routine Kāneʻohe Bay Time-series sampling. The goal of HaDS is to characterize microbial responses to diel changes in ocean biogeochemistry and investigate mechanisms of transcriptional and translation regulation. These data were collected by Dr. A. Murat Eren of the Helmholtz Institute for Functional Marine Biodiversity.";
    String time_coverage_end "2021-08-20T19:26:00Z";
    String time_coverage_start "2020-12-23T19:21:00Z";
    String title "[Diel multi 'omics] - Diel multi 'omics data from surface ocean microbial community samples collected during Hawaiʻi Diel Sampling (HaDS) in Kāneʻohe Bay and adjacent offshore waters of O'ahu, Hawai'i from December 2020 to August 2021 (From Signatures of Translational Regulation to Outcomes of Natural Selection: Evolution of Marine Microbes in Changing Environments)";
    Float64 Westernmost_Easting -157.8033;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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