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Dataset Title:  [Targeted metabolomics data from coral and sea anemone larvae exposed to
normoxic or hypoxic conditions] - Targeted metabolomics data from coral and sea
anemone larvae exposed to normoxic or hypoxic conditions in lab and field
experiments performed in USA and Bermuda during 2023-2024 (CAREER: Helping or
hindering? Determining the influence of repetitive marine heatwaves on
acclimatization of reef-building corals across biological scales)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_964174_v1)
Information:  Summary ? | License ? | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 Species (units) ?          "Galaxea fascicularis"    "Porites astreoides"
 Treatment (units) ?          "Hypoxia"    "Normoxia"
 Cohort (units) ?          1    3
 Group (units) ?          1    3
 Life_stage (units) ?          "Larva"    "Larva"
 Hours_post_treatment (hours) ?          0    0
 ADP (nmol mg protein-1) ?          0.0    15.42656
 AMP (nmol mg protein-1) ?          1.936781    96.79382
 ATP (nmol mg protein-1) ?          0.0    22.80744
 cAMP (nmol mg protein-1) ?          0.0    3.754879
 CMP (nmol mg protein-1) ?          0.0    3.426886
 CTP (nmol mg protein-1) ?          0.0    7.149511
 GDP (nmol mg protein-1) ?          0.0    5.370128
 GMP (nmol mg protein-1) ?          0.3135549    19.33277
 GTP (nmol mg protein-1) ?          0.0    7.648014
 ITP (nmol mg protein-1) ?          0.0    5.537779
 NAD (nmol mg protein-1) ?          0.0    6.73311
 NADP (nmol mg protein-1) ?          0.0    2.656518
 NAM (nmol mg protein-1) ?          0.0    7.520239
 NMN (nmol mg protein-1) ?          0.0    4.77858
 TTP (nmol mg protein-1) ?          0.0    2.931345
 UMP (nmol mg protein-1) ?          0.0    47.75426
 Methylhistidine_1 (nmol mg protein-1) ?          0.0    0.8761457
 Methylhistidine_3 (nmol mg protein-1) ?          0.0    1.298673
 Alanine (nmol mg protein-1) ?          6.74869    38.0713
 Arginine (nmol mg protein-1) ?          0.6989205    32.03212
 Asparagine (nmol mg protein-1) ?          0.6322978    8.03328
 Aspartate (nmol mg protein-1) ?          14.0979    358.3332
 Citrulline (nmol mg protein-1) ?          0.0    2.555508
 Dimethylarginine_ADMA (nmol mg protein-1) ?          0.0    0.9987468
 Dimethylarginine_SDMA (nmol mg protein-1) ?          0.7429435    14.91416
 Glutamate (nmol mg protein-1) ?          15.53578    82.08755
 Glutamine (nmol mg protein-1) ?          1.580336    91.15993
 Glycine (nmol mg protein-1) ?          6.257526    264.3847
 Histidine (nmol mg protein-1) ?          3.74146    80.47404
 Homocitrulline (nmol mg protein-1) ?          0.0    3.169996
 Isoleucine (nmol mg protein-1) ?          2.254058    10.47236
 Leucine (nmol mg protein-1) ?          2.408843    16.79429
 Lysine (nmol mg protein-1) ?          6.473278    41.88791
 Methionine (nmol mg protein-1) ?          1.644982    8.646072
 Ornithine (nmol mg protein-1) ?          0.0    3.522742
 Phenylalanine (nmol mg protein-1) ?          0.6892238    3.797081
 Proline (nmol mg protein-1) ?          1.933628    15.1791
 Serine (nmol mg protein-1) ?          0.0    235.141
 Threonine (nmol mg protein-1) ?          4.219287    22.51791
 Tryptophan (nmol mg protein-1) ?          0.2912396    6.600859
 Tyrosine (nmol mg protein-1) ?          0.8436211    53.4292
 Valine (nmol mg protein-1) ?          3.583405    23.58518
 C02 (nmol mg protein-1) ?          1.668177    30.89619
 C03 (nmol mg protein-1) ?          0.1738744    2.914504
 C03_DC (nmol mg protein-1) ?          0.0    0.05908342
 C04_Butyryl (nmol mg protein-1) ?          0.0254207    0.5316091
 C04_Isobutyryl (nmol mg protein-1) ?          0.02431962    0.640484
 C04_1 (nmol mg protein-1) ?          0.01450148    0.562434
 C04_DC_MeMal (nmol mg protein-1) ?          0.0    0.002565942
 C04_DC_Succinyl (nmol mg protein-1) ?          0.007072613    0.06923576
 C04_OH_Butyryl (nmol mg protein-1) ?          0.0    0.04191609
 C04_OH_Isobutyryl (nmol mg protein-1) ?          0.007323148    0.1504283
 C05_2_Methylbutyryl (nmol mg protein-1) ?          0.009426226    0.3222703
 C05_Isovaleryl (nmol mg protein-1) ?          0.03054314    3.589866
 C05_1 (nmol mg protein-1) ?          0.0    1.528604
 C05_DC (nmol mg protein-1) ?          0.04360795    0.23609
 C05_OH (nmol mg protein-1) ?          0.04879187    0.8613678
 C06 (nmol mg protein-1) ?          5.44862E-4    0.1130328
 C06_OH (nmol mg protein-1) ?          0.0    0.01668471
 C08 (nmol mg protein-1) ?          0.0    0.01771569
 C08_1_OH (nmol mg protein-1) ?          0.002055488    0.03928895
 C08_OH (nmol mg protein-1) ?          0.0    0.006174372
 C10 (nmol mg protein-1) ?          0.001565383    0.01393395
 C10_OH (nmol mg protein-1) ?          0.0    0.002306009
 C12 (nmol mg protein-1) ?          0.0    0.03154145
 C14 (nmol mg protein-1) ?          0.0    0.06357338
 C14_1 (nmol mg protein-1) ?          0.0    0.01112849
 C14_OH (nmol mg protein-1) ?          0.0    8.6377E-4
 C16 (nmol mg protein-1) ?          0.06799451    0.6236842
 C16_1 (nmol mg protein-1) ?          0.01028439    0.297528
 C16_OH (nmol mg protein-1) ?          0.01343645    0.2753423
 C18 (nmol mg protein-1) ?          0.0    0.2726162
 C18_1 (nmol mg protein-1) ?          0.0    0.2834226
 HBA_3 (nmol mg protein-1) ?          0.0    73.7759
 alpha_Ketoglutaric_Acid (nmol mg protein-1) ?          0.0    0.6687837
 Citrate (nmol mg protein-1) ?          0.0    28.05475
 Fumarate (nmol mg protein-1) ?          0.0    0.4676432
 Lactate (nmol mg protein-1) ?          5.178113    325.0394
 Malate (nmol mg protein-1) ?          1.78975    6.942415
 Pyruvate (nmol mg protein-1) ?          2.451218    12.97721
 Succinate (nmol mg protein-1) ?          7.452515    174.3772
 AphiaID (unitless) ?          "100906"    "288889"
 LSID (unitless) ?          "urn:lsid:marinespe..."    "urn:lsid:marinespe..."
 
Server-side Functions ?
 distinct() ?
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File type: (more information)

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(Please be patient. It may take a while to get the data.)


 

The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Species {
    String long_name "Species";
    String units "units";
  }
  Treatment {
    String long_name "Treatment";
    String units "units";
  }
  Cohort {
    Int32 actual_range 1, 3;
    String long_name "Cohort";
    String units "units";
  }
  Group {
    Int32 actual_range 1, 3;
    String long_name "Group";
    String units "units";
  }
  Life_stage {
    String long_name "Life_stage";
    String units "units";
  }
  Hours_post_treatment {
    Int32 actual_range 0, 0;
    String long_name "Hours_post_treatment";
    String units "hours";
  }
  ADP {
    Float32 actual_range 0.0, 15.42656;
    String long_name "Adp";
    String units "nmol mg protein-1";
  }
  AMP {
    Float32 actual_range 1.936781, 96.79382;
    String long_name "Amp";
    String units "nmol mg protein-1";
  }
  ATP {
    Float32 actual_range 0.0, 22.80744;
    String long_name "Atp";
    String units "nmol mg protein-1";
  }
  cAMP {
    Float32 actual_range 0.0, 3.754879;
    String long_name "Camp";
    String units "nmol mg protein-1";
  }
  CMP {
    Float32 actual_range 0.0, 3.426886;
    String long_name "Cmp";
    String units "nmol mg protein-1";
  }
  CTP {
    Float32 actual_range 0.0, 7.149511;
    String long_name "Ctp";
    String units "nmol mg protein-1";
  }
  GDP {
    Float32 actual_range 0.0, 5.370128;
    String long_name "Gdp";
    String units "nmol mg protein-1";
  }
  GMP {
    Float32 actual_range 0.3135549, 19.33277;
    String long_name "Gmp";
    String units "nmol mg protein-1";
  }
  GTP {
    Float32 actual_range 0.0, 7.648014;
    String long_name "Gtp";
    String units "nmol mg protein-1";
  }
  ITP {
    Float32 actual_range 0.0, 5.537779;
    String long_name "Itp";
    String units "nmol mg protein-1";
  }
  NAD {
    Float32 actual_range 0.0, 6.73311;
    String long_name "Nad";
    String units "nmol mg protein-1";
  }
  NADP {
    Float32 actual_range 0.0, 2.656518;
    String long_name "Nadp";
    String units "nmol mg protein-1";
  }
  NAM {
    Float32 actual_range 0.0, 7.520239;
    String long_name "Nam";
    String units "nmol mg protein-1";
  }
  NMN {
    Float32 actual_range 0.0, 4.77858;
    String long_name "Nmn";
    String units "nmol mg protein-1";
  }
  TTP {
    Float32 actual_range 0.0, 2.931345;
    String long_name "Ttp";
    String units "nmol mg protein-1";
  }
  UMP {
    Float32 actual_range 0.0, 47.75426;
    String long_name "Ump";
    String units "nmol mg protein-1";
  }
  Methylhistidine_1 {
    Float32 actual_range 0.0, 0.8761457;
    String long_name "Methylhistidine_1";
    String units "nmol mg protein-1";
  }
  Methylhistidine_3 {
    Float32 actual_range 0.0, 1.298673;
    String long_name "Methylhistidine_3";
    String units "nmol mg protein-1";
  }
  Alanine {
    Float32 actual_range 6.74869, 38.0713;
    String long_name "Alanine";
    String units "nmol mg protein-1";
  }
  Arginine {
    Float32 actual_range 0.6989205, 32.03212;
    String long_name "Arginine";
    String units "nmol mg protein-1";
  }
  Asparagine {
    Float32 actual_range 0.6322978, 8.03328;
    String long_name "Asparagine";
    String units "nmol mg protein-1";
  }
  Aspartate {
    Float32 actual_range 14.0979, 358.3332;
    String long_name "Aspartate";
    String units "nmol mg protein-1";
  }
  Citrulline {
    Float32 actual_range 0.0, 2.555508;
    String long_name "Citrulline";
    String units "nmol mg protein-1";
  }
  Dimethylarginine_ADMA {
    Float32 actual_range 0.0, 0.9987468;
    String long_name "Dimethylarginine_adma";
    String units "nmol mg protein-1";
  }
  Dimethylarginine_SDMA {
    Float32 actual_range 0.7429435, 14.91416;
    String long_name "Dimethylarginine_sdma";
    String units "nmol mg protein-1";
  }
  Glutamate {
    Float32 actual_range 15.53578, 82.08755;
    String long_name "Glutamate";
    String units "nmol mg protein-1";
  }
  Glutamine {
    Float32 actual_range 1.580336, 91.15993;
    String long_name "Glutamine";
    String units "nmol mg protein-1";
  }
  Glycine {
    Float32 actual_range 6.257526, 264.3847;
    String long_name "Glycine";
    String units "nmol mg protein-1";
  }
  Histidine {
    Float32 actual_range 3.74146, 80.47404;
    String long_name "Histidine";
    String units "nmol mg protein-1";
  }
  Homocitrulline {
    Float32 actual_range 0.0, 3.169996;
    String long_name "Homocitrulline";
    String units "nmol mg protein-1";
  }
  Isoleucine {
    Float32 actual_range 2.254058, 10.47236;
    String long_name "Isoleucine";
    String units "nmol mg protein-1";
  }
  Leucine {
    Float32 actual_range 2.408843, 16.79429;
    String long_name "Leucine";
    String units "nmol mg protein-1";
  }
  Lysine {
    Float32 actual_range 6.473278, 41.88791;
    String long_name "Lysine";
    String units "nmol mg protein-1";
  }
  Methionine {
    Float32 actual_range 1.644982, 8.646072;
    String long_name "Methionine";
    String units "nmol mg protein-1";
  }
  Ornithine {
    Float32 actual_range 0.0, 3.522742;
    String long_name "Ornithine";
    String units "nmol mg protein-1";
  }
  Phenylalanine {
    Float32 actual_range 0.6892238, 3.797081;
    String long_name "Phenylalanine";
    String units "nmol mg protein-1";
  }
  Proline {
    Float32 actual_range 1.933628, 15.1791;
    String long_name "Proline";
    String units "nmol mg protein-1";
  }
  Serine {
    Float32 actual_range 0.0, 235.141;
    String long_name "Serine";
    String units "nmol mg protein-1";
  }
  Threonine {
    Float32 actual_range 4.219287, 22.51791;
    String long_name "Threonine";
    String units "nmol mg protein-1";
  }
  Tryptophan {
    Float32 actual_range 0.2912396, 6.600859;
    String long_name "Tryptophan";
    String units "nmol mg protein-1";
  }
  Tyrosine {
    Float32 actual_range 0.8436211, 53.4292;
    String long_name "Tyrosine";
    String units "nmol mg protein-1";
  }
  Valine {
    Float32 actual_range 3.583405, 23.58518;
    String long_name "Valine";
    String units "nmol mg protein-1";
  }
  C02 {
    Float32 actual_range 1.668177, 30.89619;
    String long_name "C02";
    String units "nmol mg protein-1";
  }
  C03 {
    Float32 actual_range 0.1738744, 2.914504;
    String long_name "C03";
    String units "nmol mg protein-1";
  }
  C03_DC {
    Float32 actual_range 0.0, 0.05908342;
    String long_name "C03_dc";
    String units "nmol mg protein-1";
  }
  C04_Butyryl {
    Float32 actual_range 0.0254207, 0.5316091;
    String long_name "C04_butyryl";
    String units "nmol mg protein-1";
  }
  C04_Isobutyryl {
    Float32 actual_range 0.02431962, 0.640484;
    String long_name "C04_isobutyryl";
    String units "nmol mg protein-1";
  }
  C04_1 {
    Float32 actual_range 0.01450148, 0.562434;
    String long_name "C04_1";
    String units "nmol mg protein-1";
  }
  C04_DC_MeMal {
    Float32 actual_range 0.0, 0.002565942;
    String long_name "C04_dc_memal";
    String units "nmol mg protein-1";
  }
  C04_DC_Succinyl {
    Float32 actual_range 0.007072613, 0.06923576;
    String long_name "C04_dc_succinyl";
    String units "nmol mg protein-1";
  }
  C04_OH_Butyryl {
    Float32 actual_range 0.0, 0.04191609;
    String long_name "C04_oh_butyryl";
    String units "nmol mg protein-1";
  }
  C04_OH_Isobutyryl {
    Float32 actual_range 0.007323148, 0.1504283;
    String long_name "C04_oh_isobutyryl";
    String units "nmol mg protein-1";
  }
  C05_2_Methylbutyryl {
    Float32 actual_range 0.009426226, 0.3222703;
    String long_name "C05_2_methylbutyryl";
    String units "nmol mg protein-1";
  }
  C05_Isovaleryl {
    Float32 actual_range 0.03054314, 3.589866;
    String long_name "C05_isovaleryl";
    String units "nmol mg protein-1";
  }
  C05_1 {
    Float32 actual_range 0.0, 1.528604;
    String long_name "C05_1";
    String units "nmol mg protein-1";
  }
  C05_DC {
    Float32 actual_range 0.04360795, 0.23609;
    String long_name "C05_dc";
    String units "nmol mg protein-1";
  }
  C05_OH {
    Float32 actual_range 0.04879187, 0.8613678;
    String long_name "C05_oh";
    String units "nmol mg protein-1";
  }
  C06 {
    Float32 actual_range 5.44862e-4, 0.1130328;
    String long_name "C06";
    String units "nmol mg protein-1";
  }
  C06_OH {
    Float32 actual_range 0.0, 0.01668471;
    String long_name "C06_oh";
    String units "nmol mg protein-1";
  }
  C08 {
    Float32 actual_range 0.0, 0.01771569;
    String long_name "C08";
    String units "nmol mg protein-1";
  }
  C08_1_OH {
    Float32 actual_range 0.002055488, 0.03928895;
    String long_name "C08_1_oh";
    String units "nmol mg protein-1";
  }
  C08_OH {
    Float32 actual_range 0.0, 0.006174372;
    String long_name "C08_oh";
    String units "nmol mg protein-1";
  }
  C10 {
    Float32 actual_range 0.001565383, 0.01393395;
    String long_name "C10";
    String units "nmol mg protein-1";
  }
  C10_OH {
    Float32 actual_range 0.0, 0.002306009;
    String long_name "C10_oh";
    String units "nmol mg protein-1";
  }
  C12 {
    Float32 actual_range 0.0, 0.03154145;
    String long_name "C12";
    String units "nmol mg protein-1";
  }
  C14 {
    Float32 actual_range 0.0, 0.06357338;
    String long_name "C14";
    String units "nmol mg protein-1";
  }
  C14_1 {
    Float32 actual_range 0.0, 0.01112849;
    String long_name "C14_1";
    String units "nmol mg protein-1";
  }
  C14_OH {
    Float32 actual_range 0.0, 8.6377e-4;
    String long_name "C14_oh";
    String units "nmol mg protein-1";
  }
  C16 {
    Float32 actual_range 0.06799451, 0.6236842;
    String long_name "C16";
    String units "nmol mg protein-1";
  }
  C16_1 {
    Float32 actual_range 0.01028439, 0.297528;
    String long_name "C16_1";
    String units "nmol mg protein-1";
  }
  C16_OH {
    Float32 actual_range 0.01343645, 0.2753423;
    String long_name "C16_oh";
    String units "nmol mg protein-1";
  }
  C18 {
    Float32 actual_range 0.0, 0.2726162;
    String long_name "C18";
    String units "nmol mg protein-1";
  }
  C18_1 {
    Float32 actual_range 0.0, 0.2834226;
    String long_name "C18_1";
    String units "nmol mg protein-1";
  }
  HBA_3 {
    Float32 actual_range 0.0, 73.7759;
    String long_name "Hba_3";
    String units "nmol mg protein-1";
  }
  alpha_Ketoglutaric_Acid {
    Float32 actual_range 0.0, 0.6687837;
    String long_name "Alpha_ketoglutaric_acid";
    String units "nmol mg protein-1";
  }
  Citrate {
    Float32 actual_range 0.0, 28.05475;
    String long_name "Citrate";
    String units "nmol mg protein-1";
  }
  Fumarate {
    Float32 actual_range 0.0, 0.4676432;
    String long_name "Fumarate";
    String units "nmol mg protein-1";
  }
  Lactate {
    Float32 actual_range 5.178113, 325.0394;
    String long_name "Lactate";
    String units "nmol mg protein-1";
  }
  Malate {
    Float32 actual_range 1.78975, 6.942415;
    String long_name "Malate";
    String units "nmol mg protein-1";
  }
  Pyruvate {
    Float32 actual_range 2.451218, 12.97721;
    String long_name "Pyruvate";
    String units "nmol mg protein-1";
  }
  Succinate {
    Float32 actual_range 7.452515, 174.3772;
    String long_name "Succinate";
    String units "nmol mg protein-1";
  }
  AphiaID {
    String long_name "Aphiaid";
    String units "unitless";
  }
  LSID {
    String long_name "Lsid";
    String units "unitless";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.964174.1";
    String history 
"2025-08-03T04:47:23Z (local files)
2025-08-03T04:47:23Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_964174_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/964174";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary "These data arose from larvae of the sea anemone Nematostella vectensis and corals Galaxea fascicularis and Porites astreoides exposed to normoxic (i.e., control) or hypoxic conditions. Larvae were sampled in groups of 20-30 and these samples were processed for targeted metabolomics at the University of Pennsylvania Metabolomics Core. The dataset contains the species from which metabolomics data originate, experimental treatment (normoxia or hypoxia), experiment metadata, and abundance of each metabolite in each sample.";
    String title "[Targeted metabolomics data from coral and sea anemone larvae exposed to normoxic or hypoxic conditions] - Targeted metabolomics data from coral and sea anemone larvae exposed to normoxic or hypoxic conditions in lab and field experiments performed in USA and Bermuda during 2023-2024 (CAREER: Helping or hindering? Determining the influence of repetitive marine heatwaves on acclimatization of reef-building corals across biological scales)";
  }
}

 

Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP (external link) Data Access Protocol (DAP) (external link) and its selection constraints (external link).

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.


 
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