ERDDAP > tabledap > Data Access Form

Dataset Title:	[Hawaiian sponge cryptofauna] - Specimen vouchers of sponges collected in a study of hidden sponge biodiversity within the Hawaiian reef cryptofauna conducted on Oahu, Hawaii from 2016 to 2018 (Testing the most striking tropical marine biodiversity gradient on the planet: does it hold for sponges?)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_986892_v1)
Information:	Summary | License | FGDC | ISO 19115 | Metadata | Background | Files | Make a graph

 

Variable	Optional Constraint #1		Optional Constraint #2		Minimum	Maximum
Species (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"Amorphinopsis sp. 1"	"Verongimorpha sp. 1"
latitude (degrees_north)	!= =~ <= >= = < >		!= =~ <= >= = < >		21.3181	21.509
longitude (Long, degrees_east)	!= =~ <= >= = < >		!= =~ <= >= = < >		-157.894	-157.6692
Station (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"KAN092"	"KANI096"
Date (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"2016-11-01"	"2018-06-11"
FMNH_voucher (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"UF 2990"	"UF 4535"
HIMB_voucher (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"BKON-0857"	"KBOA1219169"
Field_ID (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"BKON-0857"	"OA092717_53"
COI_accession (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"MT571643"	"MW349624"
COI_base_pairs (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1062"	"957"
COI_blastn_result_1 (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"AY561961.1 Geodia ..."	"NC_037391.1 Halich..."
COI_blastn_result_2 (% similarity)	!= =~ <= >= = < >		!= =~ <= >= = < >		"100//96.43"	"99/99.39"
rRNA_accession_28S (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"MT425541"	"MW016376"
rRNA_base_pairs_28S (number of DNA nucleotides in the sequence)	!= =~ <= >= = < >		!= =~ <= >= = < >		"1001, 1001"	"998"
rRNA_blastn_result_28S_1 (unitless)	!= =~ <= >= = < >		!= =~ <= >= = < >		"AY026372.1 Leucoso..."	"MT808411.1 Mycale ..."
rRNA_blastn_result_28S_2 (% similarity)	!= =~ <= >= = < >		!= =~ <= >= = < >		"100/100"	"99/99.6"

 

Server-side Functions

distinct()

orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" Species latitude longitude Station Date FMNH_voucher HIMB_voucher Field_ID COI_accession COI_base_pairs COI_blastn_result_1 COI_blastn_result_2 rRNA_accession_28S rRNA_base_pairs_28S rRNA_blastn_result_28S_1 rRNA_blastn_result_28S_2 Species latitude longitude Station Date FMNH_voucher HIMB_voucher Field_ID COI_accession COI_base_pairs COI_blastn_result_1 COI_blastn_result_2 rRNA_accession_28S rRNA_base_pairs_28S rRNA_blastn_result_28S_1 rRNA_blastn_result_28S_2 Species latitude longitude Station Date FMNH_voucher HIMB_voucher Field_ID COI_accession COI_base_pairs COI_blastn_result_1 COI_blastn_result_2 rRNA_accession_28S rRNA_base_pairs_28S rRNA_blastn_result_28S_1 rRNA_blastn_result_28S_2 Species latitude longitude Station Date FMNH_voucher HIMB_voucher Field_ID COI_accession COI_base_pairs COI_blastn_result_1 COI_blastn_result_2 rRNA_accession_28S rRNA_base_pairs_28S rRNA_blastn_result_28S_1 rRNA_blastn_result_28S_2 Species latitude longitude Station Date FMNH_voucher HIMB_voucher Field_ID COI_accession COI_base_pairs COI_blastn_result_1 COI_blastn_result_2 rRNA_accession_28S rRNA_base_pairs_28S rRNA_blastn_result_28S_1 rRNA_blastn_result_28S_2 ")

File type: (more information) .asc - View OPeNDAP-style ISO-8859-1 comma-separated text. .csv - Download a ISO-8859-1 comma-separated text table (line 1: names; line 2: units; ISO 8601 times). .csvp - Download a ISO-8859-1 .csv file with line 1: name (units). Times are ISO 8601 strings. .csv0 - Download a ISO-8859-1 .csv file without column names or units. Times are ISO 8601 strings. .dataTable - A JSON file formatted for use with the Google Visualization client library (Google Charts). .das - View the dataset's metadata via an ISO-8859-1 OPeNDAP Dataset Attribute Structure (DAS). .dds - View the dataset's structure via an ISO-8859-1 OPeNDAP Dataset Descriptor Structure (DDS). .dods - OPeNDAP clients use this to download the data in the DODS binary format. .esriCsv - Download a ISO_8859_1 .csv file for ESRI's ArcGIS 9.x and below (separate date and time columns). .fgdc - View the dataset's UTF-8 FGDC .xml metadata. .geoJson - Download longitude,latitude,otherColumns data as a UTF-8 GeoJSON .json file. .graph - View a Make A Graph web page. .help - View a web page with a description of tabledap. .html - View an OPeNDAP-style HTML Data Access Form. .htmlTable - View a UTF-8 .html web page with the data in a table. Times are ISO 8601 strings. .iso19115 - View the dataset's ISO 19115-2/19139 UTF-8 .xml metadata. .itx - Download an ISO-8859-1 Igor Text File. Each response column becomes a wave. .json - View a table-like UTF-8 JSON file (missing value = 'null'; times are ISO 8601 strings). .jsonlCSV1 - View a UTF-8 JSON Lines CSV file with column names on line 1 (mv = 'null'; times are ISO 8601 strings). .jsonlCSV - View a UTF-8 JSON Lines CSV file without column names (mv = 'null'; times are ISO 8601 strings). .jsonlKVP - View a UTF-8 JSON Lines file with Key:Value pairs (missing value = 'null'; times are ISO 8601 strings). .mat - Download a MATLAB binary file. .nc - Download a flat, table-like, NetCDF-3 binary file with COARDS/CF/ACDD metadata. .ncHeader - View the UTF-8 header (the metadata) for the NetCDF-3 .nc file. .ncCF - Download a NetCDF-3 CF Discrete Sampling Geometries file (Contiguous Ragged Array). .ncCFHeader - View the UTF-8 header (the metadata) for the .ncCF file. .ncCFMA - Download a NetCDF-3 CF Discrete Sampling Geometries file (Multidimensional Array). .ncCFMAHeader - View the UTF-8 header (the metadata) for the .ncCFMA file. .nccsv - Download a NetCDF-3-like 7-bit ASCII NCCSV .csv file with COARDS/CF/ACDD metadata. .nccsvMetadata - View the dataset's metadata as the top half of a 7-bit ASCII NCCSV .csv file. .ncoJson - Download a UTF-8 NCO lvl=2 JSON file with COARDS/CF/ACDD metadata. .odvTxt - Download longitude,latitude,time,otherColumns as an ISO-8859-1 ODV Generic Spreadsheet File (.txt). .subset - View an HTML form which uses faceted search to simplify picking subsets of the data. .tsv - Download a ISO-8859-1 tab-separated text table (line 1: names; line 2: units; ISO 8601 times). .tsvp - Download a ISO-8859-1 .tsv file with line 1: name (units). Times are ISO 8601 strings. .tsv0 - Download a ISO-8859-1 .tsv file without column names or units. Times are ISO 8601 strings. .wav - Download a .wav audio file. All columns must be numeric and of the same type. .xhtml - View a UTF-8 XHTML (XML) file with the data in a table. Times are ISO 8601 strings. .kml - View a .kml file, suitable for Google Earth. .smallPdf - View a small .pdf image file with a graph or map. .pdf - View a standard, medium-sized .pdf image file with a graph or map. .largePdf - View a large .pdf image file with a graph or map. .smallPng - View a small .png image file with a graph or map. .png - View a standard, medium-sized .png image file with a graph or map. .largePng - View a large .png image file with a graph or map. .transparentPng - View a .png image file (just the data, without axes, landmask, or legend).

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  Species {
    String long_name "Species";
    String units "unitless";
  }
  latitude {
    String _CoordinateAxisType "Lat";
    Float32 actual_range 21.3181, 21.509;
    String axis "Y";
    String ioos_category "Location";
    String long_name "Latitude";
    String standard_name "latitude";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -157.894, -157.6692;
    String axis "X";
    String ioos_category "Location";
    String long_name "Long";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Station {
    String long_name "Station";
    String units "unitless";
  }
  Date {
    String long_name "Date";
    String units "unitless";
  }
  FMNH_voucher {
    String long_name "Fmnh_voucher";
    String units "unitless";
  }
  HIMB_voucher {
    String long_name "Himb_voucher";
    String units "unitless";
  }
  Field_ID {
    String long_name "Field_id";
    String units "unitless";
  }
  COI_accession {
    String long_name "Coi_accession";
    String units "unitless";
  }
  COI_base_pairs {
    String long_name "Coi_base_pairs";
    String units "unitless";
  }
  COI_blastn_result_1 {
    String long_name "Coi_blastn_result_1";
    String units "unitless";
  }
  COI_blastn_result_2 {
    String long_name "Coi_blastn_result_2";
    String units "% similarity";
  }
  rRNA_accession_28S {
    String long_name "Rrna_accession_28s";
    String units "unitless";
  }
  rRNA_base_pairs_28S {
    String long_name "Rrna_base_pairs_28s";
    String units "number of DNA nucleotides in the sequence";
  }
  rRNA_blastn_result_28S_1 {
    String long_name "Rrna_blastn_result_28s_1";
    String units "unitless";
  }
  rRNA_blastn_result_28S_2 {
    String long_name "Rrna_blastn_result_28s_2";
    String units "% similarity";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.986892.1";
    Float64 Easternmost_Easting -157.6692;
    Float64 geospatial_lat_max 21.509;
    Float64 geospatial_lat_min 21.3181;
    String geospatial_lat_units "degrees_north";
    Float64 geospatial_lon_max -157.6692;
    Float64 geospatial_lon_min -157.894;
    String geospatial_lon_units "degrees_east";
    String history 
"2026-02-13T04:29:22Z (local files)
2026-02-13T04:29:22Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_986892_v1.html";
    String infoUrl "https://osprey.bco-dmo.org/dataset/986892";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    Float64 Northernmost_Northing 21.509;
    String sourceUrl "(local files)";
    Float64 Southernmost_Northing 21.3181;
    String summary "Sponges are abundant and conspicuous on the reef surface in productive, continental reefs, but largely vanish from surveys of the oligotrophic reefs of Oceania. However, their diversity in the cryptobiota remains poorly characterized. Here, we explore the contribution of cryptobenthic sponges to overall sponge diversity on 1,750 square meters of reef habitat in Kāne'ohe Bay and Waimanalo in the island of O'ahu, Hawai'i. We also assessed cryptic sponges using 15 square meters of Autonomous Reef Monitoring Structures (ARMS) deployed in this same area. We used integrative taxonomy combining morphology, COI and 28S barcoding to delineate and track species, most of which are poorly known or undescribed. We documented 186 OTUs, 150 of which are new records for the Hawaiian Islands, increasing the known sponge fauna of Kāne'ohe Bay by 3.5 fold, and that of the Hawaiian Islands by 2.5 fold. More than ¾ of the sponge OTUs were cryptobenthic. Reef sampling provided access to 31% (44 OTUs), whereas 52% (75 OTUs) were retrieved exclusively from ARMS. These results illustrate that the interstices of ARMS units provide suitable habitat for settlement of cryptobenthic sponges that would otherwise be impossible to access through traditional field surveys. Tracking species with provisional names, using integrative species delineation anchored to vouchers, images, and DNA barcodes provides a powerful approach for working with such a poorly understood fauna.";
    String title "[Hawaiian sponge cryptofauna] - Specimen vouchers of sponges collected in a study of hidden sponge biodiversity within the Hawaiian reef cryptofauna conducted on Oahu, Hawaii from 2016 to 2018 (Testing the most striking tropical marine biodiversity gradient on the planet: does it hold for sponges?)";
    Float64 Westernmost_Easting -157.894;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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