Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Cryptic Porites lineage genomic and microbiome data] - Host genome and microbiome sequencing data for Porites cryptic lineages in classic and extreme reefs in Palau in November 2021 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_996942_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
| Make a graph
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Attributes {
s {
Library_Name {
String long_name "Library_name";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 7.16162, 7.36722;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range 134.347, 134.4766;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
Date {
String long_name "Date";
String units "unitless";
}
Study_Accession {
String long_name "Study_accession";
String units "unitless";
}
Host_genetic_dataset_accession {
String long_name "Host_genetic_dataset_accession";
String units "unitless";
}
Experiment_Accession {
String long_name "Experiment_accession";
String units "unitless";
}
Library_accession_2BRAD {
String long_name "Library_accession_2brad";
String units "unitless";
}
Microbial_community_data_accession {
String long_name "Microbial_community_data_accession";
String units "unitless";
}
ITS2_library_biosample {
String long_name "Its2_library_biosample";
String units "unitless";
}
ITS2_Forward {
String long_name "Its2_forward";
String units "unitless";
}
ITS2_Reverse {
String long_name "Its2_reverse";
String units "unitless";
}
Library_biosample_16S {
String long_name "Library_biosample_16s";
String units "unitless";
}
Forward_16S {
String long_name "Forward_16s";
String units "unitless";
}
Reverse_16S {
String long_name "Reverse_16s";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.996942.1";
Float64 Easternmost_Easting 134.4766;
Float64 geospatial_lat_max 7.36722;
Float64 geospatial_lat_min 7.16162;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max 134.4766;
Float64 geospatial_lon_min 134.347;
String geospatial_lon_units "degrees_east";
String history
"2026-09-01T15:47:21Z (local files)
2026-09-01T15:47:21Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_996942_v1.html";
String infoUrl "https://osprey.bco-dmo.org/dataset/996942";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 7.36722;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 7.16162;
String summary "This dataset contains host genomic and associated microbiome sequence data generated to investigate patterns of cryptic lineage structure, symbiotic diversity, and microbial community composition in reef-building corals (Porites spp.) across environmental gradients. Samples were collected from three classic (typical temperatures) and three extreme (higher temperatures and light attenuation) reef sites in Palau, and processed using high-throughput sequencing approaches to characterize (1) host population genomic variation and (2) taxonomic diversity of coral-associated microbial communities (Symbiodiniaceae and bacteria). Host genomic data were generated using a 2bRAD approach and analyzed to resolve lineage differentiation. Microbiome communities were characterized through amplicon sequencing, enabling assessment of microbial assemblages associated with distinct host lineages and environmental conditions.";
String title "[Cryptic Porites lineage genomic and microbiome data] - Host genome and microbiome sequencing data for Porites cryptic lineages in classic and extreme reefs in Palau in November 2021 (Collaborative Research: How do selection, plasticity, and dispersal interact to determine coral success in warmer and more variable environments?)";
Float64 Westernmost_Easting 134.347;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.