Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_998962_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
BioSample {
String long_name "Biosample";
String units "unitless";
}
sample_name {
String long_name "Sample_name";
String units "unitless";
}
organism {
String long_name "Organism";
String units "unitless";
}
isolate {
String long_name "Isolate";
String units "unitless";
}
host {
String long_name "Host";
String units "unitless";
}
isolation_source {
String long_name "Isolation_source";
String units "unitless";
}
geo_loc_name {
String long_name "Geo_loc_name";
String units "unitless";
}
tissue {
String long_name "Tissue";
String units "unitless";
}
date_collection {
String long_name "Date_collection";
String units "unitless";
}
siteName {
String long_name "Sitename";
String units "unitless";
}
State {
String long_name "State";
String units "unitless";
}
Region {
String long_name "Region";
String units "unitless";
}
Region2 {
String long_name "Region2";
String units "unitless";
}
Storage {
String long_name "Storage";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 29.24, 37.81;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -90.0, -75.66;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
Accesion {
String long_name "Accesion";
String units "unitless";
}
BioProject {
String long_name "Bioproject";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.998962.1";
Float64 Easternmost_Easting -75.66;
Float64 geospatial_lat_max 37.81;
Float64 geospatial_lat_min 29.24;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -75.66;
Float64 geospatial_lon_min -90.0;
String geospatial_lon_units "degrees_east";
String history
"2026-06-25T02:31:18Z (local files)
2026-06-25T02:31:18Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_998962_v1.html";
String infoUrl "https://osprey.bco-dmo.org/dataset/998962";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 37.81;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 29.24;
String summary
"For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline.
This dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled \"Co-phylogeographic structure in a disease-causing parasite and its oyster host.\" This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361.";
String title "[Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)";
Float64 Westernmost_Easting -90.0;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.