ERDDAP > info > bcodmo_dataset_998962_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)		F   I   M	background			BCO-DMO	bcodmo_dataset_998962_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.998962.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-75.66
attribute	NC_GLOBAL	geospatial_lat_max	double	37.81
attribute	NC_GLOBAL	geospatial_lat_min	double	29.24
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-75.66
attribute	NC_GLOBAL	geospatial_lon_min	double	-90.0
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/998962
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	37.81
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	29.24
attribute	NC_GLOBAL	summary	String	For host–parasite interactions, genotype-by-sequencing can allow the simultaneous examination of host and parasite genomes and can yield insight into co-evolutionary processes. The eastern oyster, Crassostrea virginica, is among the most important aquacultured species in the United States. Natural and farmed oyster populations can be heavily impacted by ‘dermo' disease caused by an alveolate protist, Perkinsus marinus. Here, we used restricted site-associated DNA sequencing (RADseq) to simultaneously examine the spatial population genetic structure of host and parasite. We analyzed 393 single-nucleotide polymorphisms (SNPs) for P. marinus and 52,100 SNPs for C. virginica from 36 individual oysters from the Gulf of Mexico (GOM) and mid-Atlantic coastline. This dataset includes metadata, methods, links to published code and processed data used to generate figures for results publication Weatherup et al. (2024, doi:10.1017/S0031182024000611) titled "Co-phylogeographic structure in a disease-causing parasite and its oyster host." This dataset also includes genetic accession identifiers for sequence data contributed to the National Center for Biotechnology Information (NCBI)'s Sequence Read Archive (SRA), available under BioProject PRJNA1074361.
attribute	NC_GLOBAL	title	String	[Co-phylogeny of Perkinsus-Crassostrea] - RADseq SNP genotypes of Perkinsus marinus and Crassostrea virginica from the Gulf of Mexico and eastern Atlantic shorelines collected from 2011-2019 (The genetic legacy of an Asian oyster introduction and its disease-causing parasite)
attribute	NC_GLOBAL	Westernmost_Easting	double	-90.0
variable	BioSample		String
attribute	BioSample	long_name	String	Biosample
attribute	BioSample	units	String	unitless
variable	sample_name		String
attribute	sample_name	long_name	String	Sample_name
attribute	sample_name	units	String	unitless
variable	organism		String
attribute	organism	long_name	String	Organism
attribute	organism	units	String	unitless
variable	isolate		String
attribute	isolate	long_name	String	Isolate
attribute	isolate	units	String	unitless
variable	host		String
attribute	host	long_name	String	Host
attribute	host	units	String	unitless
variable	isolation_source		String
attribute	isolation_source	long_name	String	Isolation_source
attribute	isolation_source	units	String	unitless
variable	geo_loc_name		String
attribute	geo_loc_name	long_name	String	Geo_loc_name
attribute	geo_loc_name	units	String	unitless
variable	tissue		String
attribute	tissue	long_name	String	Tissue
attribute	tissue	units	String	unitless
variable	date_collection		String
attribute	date_collection	long_name	String	Date_collection
attribute	date_collection	units	String	unitless
variable	siteName		String
attribute	siteName	long_name	String	Sitename
attribute	siteName	units	String	unitless
variable	State		String
attribute	State	long_name	String	State
attribute	State	units	String	unitless
variable	Region		String
attribute	Region	long_name	String	Region
attribute	Region	units	String	unitless
variable	Region2		String
attribute	Region2	long_name	String	Region2
attribute	Region2	units	String	unitless
variable	Storage		String
attribute	Storage	long_name	String	Storage
attribute	Storage	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	29.24, 37.81
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-90.0, -75.66
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	Accesion		String
attribute	Accesion	long_name	String	Accesion
attribute	Accesion	units	String	unitless
variable	BioProject		String
attribute	BioProject	long_name	String	Bioproject
attribute	BioProject	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.