bcodmo_dataset_1010240_v1

Name: [FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs)
Creator: BCO-DMO
License: The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs)		F I M	background			BCO-DMO	bcodmo_dataset_1010240_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.1010240.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-93.59718
attribute	NC_GLOBAL	geospatial_lat_max	double	27.9086
attribute	NC_GLOBAL	geospatial_lat_min	double	27.87532
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-93.59718
attribute	NC_GLOBAL	geospatial_lon_min	double	-93.81482
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/1010240
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	27.9086
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	27.87532
attribute	NC_GLOBAL	summary	String	This dataset includes microscopy and omics data associated with 15 apparently healthy and diseased Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Northwest Gulf of Mexico) in September 2022, one month after a coral disease outbreak. Samples were collected from pairs of apparently healthy corals (HH tissue; n=5) and diseased corals (n=5). From diseased corals, two tissue samples were taken: apparently healthy tissue (HD) and disease-adjacent tissue (DD). Histopathology light microscopy images and electron micrographs of Symbiodiniaceae cells generated with transmission electron microscopy (TEM) are included as PDF files sorted by sample. These data also include NCBI Sequence Read Archive (SRA) accession numbers for raw fastq files of 16S rRNA gene sequencing, internal transcribed spacer-2 (ITS-2) sequencing, and RNA-Seq. This dataset supports an integrative approach for characterizing signatures of marine diseases at cellular, sub-cellular, and gene expression levels spanning multiple holobiont members: the coral host, Symbiodiniaceae microeukaryotes, bacteria/archaea communities, and viruses.
attribute	NC_GLOBAL	title	String	[FGB22 PSTR Coral Disease Microscopy & Omics] - Light microscopy images, Symbiodiniaceae electron micrographs, and NCBI Sequence Read Archive (SRA) accession numbers associated with diseased and healthy Pseudodiploria strigosa corals collected from the Flower Garden Banks National Marine Sanctuary (Collaborative Research: RAPID: A multi-scale approach to predicting coral disease spread: leveraging an outbreak on coral-dense isolated reefs)
attribute	NC_GLOBAL	Westernmost_Easting	double	-93.81482
variable	sample_id		String
attribute	sample_id	long_name	String	Sample_id
attribute	sample_id	units	String	unitless
variable	coral_id		int
attribute	coral_id	actual_range	int	1, 10
attribute	coral_id	long_name	String	Coral_id
attribute	coral_id	units	String	unitless
variable	col_health		String
attribute	col_health	long_name	String	Col_health
attribute	col_health	units	String	unitless
variable	coral_species		String
attribute	coral_species	long_name	String	Coral_species
attribute	coral_species	units	String	unitless
variable	coral_aphiaID		float
attribute	coral_aphiaID	actual_range	float	718718.0, 718718.0
attribute	coral_aphiaID	long_name	String	Coral_aphiaid
attribute	coral_aphiaID	units	String	unitless
variable	collection_date		String
attribute	collection_date	long_name	String	Collection_date
attribute	collection_date	units	String	unitless
variable	site		String
attribute	site	long_name	String	Site
attribute	site	units	String	unitless
variable	buoy		float
attribute	buoy	actual_range	float	2.0, 5.0
attribute	buoy	long_name	String	Buoy
attribute	buoy	units	String	unitless
variable	depth_f		float
attribute	depth_f	actual_range	float	61.0, 79.0
attribute	depth_f	long_name	String	Depth_ft
attribute	depth_f	units	String	feet
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	27.87532, 27.9086
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-93.81482, -93.59718
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	ncbi_bioproject		String
attribute	ncbi_bioproject	long_name	String	Ncbi_bioproject
attribute	ncbi_bioproject	units	String	unitless
variable	ncbi_biosample		String
attribute	ncbi_biosample	long_name	String	Ncbi_biosample
attribute	ncbi_biosample	units	String	unitless
variable	ncbi_16S_sra		String
attribute	ncbi_16S_sra	long_name	String	Ncbi_16s_sra
attribute	ncbi_16S_sra	units	String	unitless
variable	ncbi_ITS2_sra		String
attribute	ncbi_ITS2_sra	long_name	String	Ncbi_its2_sra
attribute	ncbi_ITS2_sra	units	String	unitless
variable	ncbi_RNAseq_sra		String
attribute	ncbi_RNAseq_sra	long_name	String	Ncbi_rnaseq_sra
attribute	ncbi_RNAseq_sra	units	String	unitless
variable	TEM_file		String
attribute	TEM_file	long_name	String	Tem_file
attribute	TEM_file	units	String	unitless
variable	histo_file		String
attribute	histo_file	long_name	String	Histo_file
attribute	histo_file	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.