BCO-DMO ERDDAP
Accessing BCO-DMO data
log in    
Brought to you by BCO-DMO    

ERDDAP > info > bcodmo_dataset_1011111_v1

Grid
DAP
Data
Sub-
set
Table
DAP
Data
Make
A
Graph
W
M
S
Source
Data
Files
Acces-
sible
?
Title Sum-
mary
FGDC,
ISO,
Metadata
Back-
ground
Info
RSS E
mail
Institution Dataset ID
     data        files  public [Protein abundance] - Protein Abundance data from Zn and CO2 culture experiments on the
diatom Phaeodactylum tricornutum (Parsing the biogeochemistry of marine carbonic anhydrases)
   ?            M   background (external link) RSS Subscribe BCO-DMO bcodmo_dataset_1011111_v1

The Dataset's Variables and Attributes

Row Type Variable Name Attribute Name Data Type Value
attribute NC_GLOBAL cdm_data_type String Other
attribute NC_GLOBAL Conventions String COARDS, CF-1.6, ACDD-1.3
attribute NC_GLOBAL creator_email String info at bco-dmo.org
attribute NC_GLOBAL creator_name String BCO-DMO
attribute NC_GLOBAL creator_url String https://www.bco-dmo.org/ (external link)
attribute NC_GLOBAL doi String 10.26008/1912/bco-dmo.1011111.1
attribute NC_GLOBAL infoUrl String https://osprey.bco-dmo.org/dataset/1011111 (external link)
attribute NC_GLOBAL institution String BCO-DMO
attribute NC_GLOBAL license String The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.
attribute NC_GLOBAL sourceUrl String (local files)
attribute NC_GLOBAL summary String Phaeodactylum tricornutum was grown under 6 different experimental treatments all carried out in biological triplicate. In a CO2 experiment, cultures were grown with replete Zn under varying pCO2 (200, 400, and 750 ppm CO2). In a Zn experiment, cultures were grown under ambient pCO2 (no modification to bubbling) with variable Zinc concentrations (3 nM, 30 nM, and 100 nM [Zn]T)

Here, proteomic data from experimental treatments are reported. We specifically look at the protein abundances of 3 relevant groups of proteins: carbonic anhydrase enzymes, bicarbonate transporters, metal stress biomarkers (Fe and Zn)

The data collected for this project are used to assess the plasticity of the model diatom Phaeodactylum tricornutum's CCMs, specifically carbonic anhydrase (CA) enzymes and bicarbonate transporters.
attribute NC_GLOBAL title String [Protein abundance] - Protein Abundance data from Zn and CO2 culture experiments on the diatom Phaeodactylum tricornutum (Parsing the biogeochemistry of marine carbonic anhydrases)
variable NCBI_RefSeq   String  
attribute NCBI_RefSeq long_name String Ncbi_refseq
attribute NCBI_RefSeq units String unitless
variable UniProt_RefID   String  
attribute UniProt_RefID long_name String Uniprot_refid
attribute UniProt_RefID units String unitless
variable Treatment   String  
attribute Treatment long_name String Treatment
attribute Treatment units String unitless
variable Replicate   String  
attribute Replicate long_name String Replicate
attribute Replicate units String unitless
variable Protein_Abundance   float  
attribute Protein_Abundance actual_range float 668.102, 9.86E8
attribute Protein_Abundance long_name String Protein_abundance
attribute Protein_Abundance units String unitless (relative)

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.


 
ERDDAP, Version 2.22
Disclaimers | Privacy Policy | Contact