ERDDAP > info > bcodmo_dataset_712377

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Acropora cervicornis calcification rates] - Acropora cervicornis growth rates under different pH and temperature treatments from experiments at Summerland Key, Florida in September of 2016 (CAREER: Applying phenotypic variability to identify resilient Acropora cervicornis genotypes in the Florida Keys)		I   M	background			BCO-DMO	bcodmo_dataset_712377

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	Physiological Methods Photosynthesis, respiration, and calcification measurements were performed on each fragment using 300 mL temperature-controlled respirometry chambers filled with seawater from the treatment aquaria that was continuously stirred with a magnetic stir bar. \u00a0The chambers were used to assess the rates of respiration (Rd) in the dark and rates of photosynthesis (Pn) and calcification in the light. \u00a0Light was supplied by a series of blue and red LEDs with adjustable intensity (150 uMol quanta m-2 sec-1). \u00a0Water samples were taken from each chamber prior to a cycle and also at the end of both dark and light incubations (60 minutes each) for measurements of pHT (pH on the total scale) and total alkalinity (AT) as described in Martin and Gattuso (2009). \u00a0 Calcification - Total alkalinity (TA) values were measured using an automatic potentiometric titrator (Metrohm 807 Titrando, Riverview, FL) to the second end point of a 15.3-g accurately weighed seawater sample. \u00a0Total alkalinity values were then computed using the Gran equation (DOE, 1994) with pH values lower than 3.9 for creating the Gran plot. The pH electrodes (Metrohm 807 Titrando) were calibrated daily as described above. \u00a0The acid titrant concentration was 0.05N HCl (JT Baker, Phillipsburg, NJ). \u00a0Alkalinity was calculated using the first derivative of the curve for the evaluation of the exact end point. \u00a0Standards for total seawater alkalinity and provided by Dickson were run daily (Dickson, 2007). \u00a0The differences between duplicate samples and standards were less than 5 uEq kg-1 (for calibration of the titrator, differences were measured between triplicate samples). \u00a0Water samples were analyzed immediately or stored in darkness at 4C and processed within 24 hours of collection. \u00a0 Dickson AG, Sabine CL, and Christian JR (2007) Guide to best practices for ocean CO2 measurements: PICES Special Publication. 3, 191 p. Martin S and Gattuso J-P (2009) Response of Mediterranean coralline algae to ocean acidification and elevated temperature. Glob Change Biol 15:2089-2100.\u00a0 Marubini F and Thake B (1999) Bicarbonate addition promotes coral growth. Limnol and Oceanogr 44: 716-720. Riebesell U, Fabry VJ, Hansson L, and Gattuso JP (2010) Guide to best practices for ocean acidification research and data reporting. European Commission, European Research Area. Brussels. 258 p \u00a0
attribute	NC_GLOBAL	awards_0_award_nid	String	642851
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1452538
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward?AWD_ID=1452538&HistoricalAwards=false
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	Michael E. Sieracki
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50446
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Acropora cervicornis calcification PI: Erinn Muller data version: 2017-10-05
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2017-08-08T15:40:41Z
attribute	NC_GLOBAL	date_modified	String	2019-10-18T16:32:43Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.712377.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/712377
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	YSI ProPlus
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	temperature measured with YSI Pro 2030
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	716203
attribute	NC_GLOBAL	instruments_0_description	String	The YSI Professional Plus handheld multiparameter meter provides for the measurement of a variety of combinations for dissolved oxygen, conductivity, specific conductance, salinity, resistivity, total dissolved solids (TDS), pH, ORP, pH/ORP combination, ammonium (ammonia), nitrate, chloride and temperature. More information from the manufacturer.
attribute	NC_GLOBAL	instruments_0_instrument_name	String	YSI Professional Plus Multi-Parameter Probe
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	666
attribute	NC_GLOBAL	instruments_0_supplied_name	String	YSI Pro 2030
attribute	NC_GLOBAL	instruments_1_acronym	String	pH Sensor
attribute	NC_GLOBAL	instruments_1_dataset_instrument_nid	String	716206
attribute	NC_GLOBAL	instruments_1_description	String	General term for an instrument that measures the pH or how acidic or basic a solution is.
attribute	NC_GLOBAL	instruments_1_instrument_name	String	pH Sensor
attribute	NC_GLOBAL	instruments_1_instrument_nid	String	674
attribute	NC_GLOBAL	instruments_1_supplied_name	String	Mettler Toledo SevenGo Pro
attribute	NC_GLOBAL	instruments_2_acronym	String	Automatic titrator
attribute	NC_GLOBAL	instruments_2_dataset_instrument_nid	String	712520
attribute	NC_GLOBAL	instruments_2_description	String	Instruments that incrementally add quantified aliquots of a reagent to a sample until the end-point of a chemical reaction is reached.
attribute	NC_GLOBAL	instruments_2_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB12/
attribute	NC_GLOBAL	instruments_2_instrument_name	String	Automatic titrator
attribute	NC_GLOBAL	instruments_2_instrument_nid	String	682
attribute	NC_GLOBAL	instruments_2_supplied_name	String	Metrohm 807 Titrando
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, calcification, chamber, chemical, cycle, data, dataset, date, dmo, erddap, genotype, management, oceanography, office, preliminary, tank, Temp, temperature, time
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/712377/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/712377
attribute	NC_GLOBAL	param_mapping	String	{'712377': {}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/712377/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Mote Marine Laboratory
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	Mote
attribute	NC_GLOBAL	people_0_person_name	String	Dr Erinn Muller
attribute	NC_GLOBAL	people_0_person_nid	String	642853
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_1_person_name	String	Amber York
attribute	NC_GLOBAL	people_1_person_nid	String	643627
attribute	NC_GLOBAL	people_1_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_1_role_type	String	related
attribute	NC_GLOBAL	project	String	Resilient Acerv
attribute	NC_GLOBAL	projects_0_acronym	String	Resilient Acerv
attribute	NC_GLOBAL	projects_0_description	String	ABSTRACT Caribbean staghorn coral was one of the most common corals within reefs of the Florida Keys several decades ago. Over the last 40 years disease, bleaching, overfishing and habitat degradation caused a 95% reduction of the population. Staghorn coral is now listed as threatened under the U.S. Endangered Species Act of 1973. Within the past few years, millions of dollars have been invested for the purpose of restoring the population of staghorn coral within Florida and the U.S. Virgin Islands. Significant effort has been placed on maintaining and propagating corals of known genotypes within coral nurseries for the purpose of outplanting. However, little is known about the individual genotypes that are currently being outplanted from nurseries onto coral reefs. Are the genotypes being used for outplanting resilient enough to survive the three major stressors affecting the population in the Florida Keys: disease, high water temperatures, and ocean acidification? The research within the present study will be the first step in answering this critically important question. The funded project will additionally develop a research-based afterschool program with K-12 students in the Florida Keys and U.S. Virgin Islands that emphasizes an inquiry-based curriculum, STEM research activities, and peer-to-peer mentoring. The information from the present study will help scientists predict the likelihood of species persistence within the lower Florida Keys under future climate-change and ocean-acidification scenarios. Results of this research will also help guide restoration efforts throughout Florida and the Caribbean, and lead to more informative, science-based restoration activities. Acropora cervicornis dominated shallow-water reefs within the Florida Keys for at least the last half a million years, but the population has recently declined due to multiple stressors. Understanding the current population level of resilience to three major threats - disease outbreaks, high water temperatures, and ocean acidification conditions - is critical for the preservation of this threatened species. Results from the present study will answer the primary research question: will representative genotypes from the lower Florida Keys provide enough phenotypic variation for this threatened species to survive in the future? The present proposal will couple controlled laboratory challenge experiments with field data and modeling applications, and collaborate with local educators to fulfill five objectives: 1) identify A. cervicornis genotypes resistant to disease, 2) identify A. cervicornis genotypes resilient to high water temperature and ocean acidification conditions, 3) quantify how high water temperature and ocean acidification conditions impact disease dynamics on A. cervicornis; 4) determine tradeoffs in life-history traits because of resilience factors; and 5) apply a trait-based model, which will predict genotypic structure of a population under different environmental scenarios.
attribute	NC_GLOBAL	projects_0_end_date	String	2020-05
attribute	NC_GLOBAL	projects_0_geolocation	String	Florida Keys, Summerland Key, FL 24.563595°, -81.278572°
attribute	NC_GLOBAL	projects_0_name	String	CAREER: Applying phenotypic variability to identify resilient Acropora cervicornis genotypes in the Florida Keys
attribute	NC_GLOBAL	projects_0_project_nid	String	642850
attribute	NC_GLOBAL	projects_0_start_date	String	2015-04
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	This dataset contains Acropora cervicornis calcification data from experiments conducted in tanks at Summerland Key, Florida (24.6616,-81.4538) between 2016-09-02 and 2016-09-10 with corals from a nursery located near Looe Key Reef (24.5636, -81.2786).
attribute	NC_GLOBAL	title	String	[Acropora cervicornis calcification rates] - Acropora cervicornis growth rates under different pH and temperature treatments from experiments at Summerland Key, Florida in September of 2016 (CAREER: Applying phenotypic variability to identify resilient Acropora cervicornis genotypes in the Florida Keys)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	pH		String
attribute	pH	bcodmo_name	String	pH
attribute	pH	description	String	Treatment pH level; ambient = 8.1 pH; hCO2 = 7.7 pH
attribute	pH	long_name	String	pH
attribute	pH	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/PHXXZZXX/
attribute	pH	units	String	unitless
variable	Temp		byte
attribute	Temp	_FillValue	byte	127
attribute	Temp	actual_range	byte	27, 31
attribute	Temp	bcodmo_name	String	temperature
attribute	Temp	description	String	Treatment temperature level
attribute	Temp	long_name	String	Temperature
attribute	Temp	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/TEMPP901/
attribute	Temp	units	String	Celsius
variable	Tank		byte
attribute	Tank	_FillValue	byte	127
attribute	Tank	actual_range	byte	1, 20
attribute	Tank	bcodmo_name	String	tank
attribute	Tank	description	String	Tank number that held the particular coral fragment
attribute	Tank	long_name	String	Tank
attribute	Tank	units	String	unitless
variable	Chamber		String
attribute	Chamber	bcodmo_name	String	treatment
attribute	Chamber	description	String	Chamber number that held the coral fragment during the light and dark cycle
attribute	Chamber	long_name	String	Chamber
attribute	Chamber	units	String	unitless
variable	Genotype		byte
attribute	Genotype	_FillValue	byte	127
attribute	Genotype	actual_range	byte	1, 63
attribute	Genotype	bcodmo_name	String	sample_descrip
attribute	Genotype	description	String	Genotype number of the coral animal for each fragment
attribute	Genotype	long_name	String	Genotype
attribute	Genotype	units	String	unitless
variable	Cycle		String
attribute	Cycle	bcodmo_name	String	treatment
attribute	Cycle	description	String	Characterizes whether the coral was exposed to light or held in the dark prior to final measurements
attribute	Cycle	long_name	String	Cycle
attribute	Cycle	units	String	unitless
variable	Calcification		float
attribute	Calcification	_FillValue	float	NaN
attribute	Calcification	actual_range	float	-0.307, 1.594
attribute	Calcification	bcodmo_name	String	calcification
attribute	Calcification	description	String	Rate at which the coral is utilizing calcium carbonate for skeletal growth
attribute	Calcification	long_name	String	Calcification
attribute	Calcification	units	String	micromoles of calcium carbonate per centimeter squred per hour (CaCO3/cm2/h)
variable	Date		String
attribute	Date	bcodmo_name	String	date
attribute	Date	description	String	Date in format yyyy-mm-dd
attribute	Date	long_name	String	Date
attribute	Date	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	Date	source_name	String	Date
attribute	Date	time_precision	String	1970-01-01
attribute	Date	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.