ERDDAP > info > bcodmo_dataset_739309

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Vulnerability of coral reefs to bioerosion] - Vulnerability of coral reefs to bioerosion from land-based sources of pollution using parameters quantified by computerized tomography. (Collaborative Research: Identifying the Role of Basin-scale Climate Variability in the Decline of Atlantic Corals)		F   I   M	background			BCO-DMO	bcodmo_dataset_739309

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute	NC_GLOBAL	acquisition_description	String	Coral cores (n57) were collected in July 2013 from the shallow reef at Kahekili in Kaanapali, West Maui, Hawaii, from scleractinian Porites lobata (Figure 1) in water depths of between 1 and 3 m and in the vicinity of brackish SGD "seeps" near Kahekili Beach Park (Glenn et al., 2013), approximately 0.5 km southwest of the LWRF (Table 1). All cores were collected from living Porites spp., except for adjacent to the seep where the coral colony was dead upon collection. Colonies were selected based on several criteria including distance from shore, distance from seep, coral shape, and water depth. Metrics of coral reef health (bioerosion,calcification, and growth rate) were quantified at the Woods Hole Oceanographic Institution\u2019s CT Scanning Facility (Crook et al., 2013) where CT scan images (supporting information Figure S1) were used to calculate the proportion of the skeleton eroded (>1 mm boring diameter) by boring organisms and calculated as the total volume of CaCO3 removed relative to the total volume of the individual Porites coral core (Barkley et al., 2015; DeCarlo et al., 2015) using coral CT (DeCarlo & Cohen, 2016). The average growth rate reported in this study is the average linear extension rate and respective standard deviation for the length of cores analyzed per site. Pearson correlation coefficients and respective p values were calculated in Excel. Significance levels were tested at the 95% and 90% confidence level. The number of years for analysis ranged from the upper 10\u201326 years and was calculated as linear extension (mm) per year. The range (i.e., length of core analyzed) reflects the fact that the quality/preservation of banding was not consistent across the collection sites due to differences in boring and erosion (supporting information Figure S1). In comparison to measured bioerosion rates, predicted bioerosion rates were calculated using the equation from DeCarlo et al. (2015) where bioerosion rate5211.96 * Xarag143.52. Coral life spans were calculated based on annual growth rate and core length. Coral life span for the dead specimen was determined by comparing bomb-derived radiocarbon (14C) values measured at five depth intervals to reference bomb-curves from Hawaii (Andrews et al., 2016). Samples were prepared for Accelerator Mass Spectrometry (AMS) radiocarbon(14C) dating at the National Ocean Sciences Accelerator Mass Spectrometry (NOSAMS) facility. Coral nitrogen isotope (d15N) values were determined by collecting skeletal material (\u0003300 mg) from the upper 4.0\u20135.6 mm of growth. Approximately 18 mg of material was placed into tin capsules with an approximately equivalent mass of vanadium oxide (V2O5) catalyst to ensure complete combustion for analysis using a Costech elemental analyzer\u2014Isotope Ratio Mass Spectrometry (EA-IRMS) at the University of California at Santa Cruz and the USGS Stable Isotope Lab to determine d15N composition. Analytical uncertainty of0.16&is reported based on replicate analysis of the international nitrogen standard, acetanilide. Sampling for water at the primary seep site and in adjacent coastal waters was conducted in September 2014 and March 2016. In 2014, sampling of the submarine springs was conducted using a piezometer point directly inserted into the primary seep site (Swarzenski et al., 2012) and a 12 V peristaltic pump during both high and low tide (supporting information Table S1). At each sampling site, the salinity and temperature of the seep water and bottom water was recorded using calibrated YSI multiprobes. Seawater sampling in March 2016 was conducted near the coral sites every 4 h over a 6 day period for nutrients and carbonate chemistry variables. A peristaltic pump was used to pump seawater from the seafloor and temperature and salinity were recorded using a calibrated YSI multimeter. In situ temperatures were also recorded fromSolonist CTD Divers installed at each sampling tube (Prouty et al., 2017).
attribute	NC_GLOBAL	awards_0_award_nid	String	655203
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1537338
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1537338
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Vulnerability of coral reefs to bioerosion A. Cohen and N. Prouty, PIs Version 27 June 2018
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2018-06-27T14:17:36Z
attribute	NC_GLOBAL	date_modified	String	2019-06-07T19:18:43Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.739309.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-156.6931
attribute	NC_GLOBAL	geospatial_lat_max	double	20.9451
attribute	NC_GLOBAL	geospatial_lat_min	double	20.9373
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-156.6931
attribute	NC_GLOBAL	geospatial_lon_min	double	-156.6935
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	3.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	1.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/739309
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	CT Scanner
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	The cores were passed through the Siemens Volume Zoom Spiral computed tomography (CT) scanner at Woods Hole Oceanographic Institution.
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	739317
attribute	NC_GLOBAL	instruments_0_description	String	A CT scan makes use of computer-processed combinations of many X-ray measurements taken from different angles to produce cross-sectional (tomographic) images (virtual "slices") of specific areas of a scanned object.
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Computerized Tomography (CT) Scanner
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	707113
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Siemens Volume Zoom Spiral computed tomography (CT) scanner
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, bioerosion, Bioerosion_rate, Bioerosion_volume, biological, calcification, Calcification_rate, chemical, core, Core_Length, data, dataset, date, delta, delta_N_15, delta_N_15_error, density, depth, dmo, erddap, error, growth, Growth_rate, latitude, length, lifespan, longitude, management, oceanography, office, preliminary, rate, sample, Sample_ID, thickness, time, tissue, Tissue_thickness, volume, water, Water_depth
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/739309/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/739309
attribute	NC_GLOBAL	Northernmost_Northing	double	20.9451
attribute	NC_GLOBAL	param_mapping	String	{'739309': {'Latitude': 'flag - latitude', 'Water_depth': 'master - depth', 'Longitude': 'flag - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/739309/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_0_person_name	String	Anne L Cohen
attribute	NC_GLOBAL	people_0_person_nid	String	51428
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	United States Geological Survey
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	USGS
attribute	NC_GLOBAL	people_1_person_name	String	Nancy Prouty
attribute	NC_GLOBAL	people_1_person_nid	String	739319
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_2_person_name	String	Anne L Cohen
attribute	NC_GLOBAL	people_2_person_nid	String	51428
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Hannah Ake
attribute	NC_GLOBAL	people_3_person_nid	String	650173
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Coral climate effects
attribute	NC_GLOBAL	projects_0_acronym	String	Coral climate effects
attribute	NC_GLOBAL	projects_0_description	String	Text from the NSF award abstract: Human carbon dioxide emissions are causing measureable changes in ocean conditions. Many of these changes negatively affect coral reef ecosystems, reducing their ability to provide food, arable land, tourist destinations and coastline protection for hundreds of millions of people worldwide. This project focuses on the effects of enhanced stratification, caused by ocean warming, on the growth of reef-building corals across the Caribbean and Bermuda. Enhanced stratification impacts primary productivity which generates food for corals. Initial data generated by the investigators suggest that Atlantic coral growth has declined in the last 5 decades in response to these changes. A laboratory-based experiment is designed to test this hypothesis. If verified, the projected decline in Atlantic primary productivity through the 21st century could potentially rival and will certainly exacerbate the effects of warming and ocean acidification on coral reef ecosystems across the North Atlantic. Support is provided for graduate research, and undergraduate participation is facilitated through the Woods Hole Oceanographic Institution Summer Fellowship and the Bermuda Institute of Ocean Sciences-Princeton Environmental Institute Summer Internship Programs. The results will be presented at national and international meetings and disseminated in a timely manner through peer-reviewed publications. All data produced through this program will be archived in the Biological and Chemical Oceanographic Data Management Office. Anthropogenic climate change has emerged as a principle threat to coral reef survival in the 21st century. In addition to ocean warming and acidification, global climate models project enhanced stratification of the upper oceans through the 21st century and a consequent decline in productivity, by up to 50%, in the North Atlantic. This project employs controlled laboratory manipulation experiments to test the link between productivity and growth of the dominant reef-building corals across the Caribbean and Bermuda. Preliminary data generated by the investigators, including multi-decade long coral growth histories and nitrogen isotope ratios of coral tissue and skeleton, suggest that coral growth across the region has declined over the past 50 years in response to productivity changes already underway. If the link between ocean circulation, productivity decline, and coral growth is verified, the projected 21st century decline in productivity could rival and will certainly exacerbate the effects of warming and ocean acidification on North Atlantic coral reef ecosystems.
attribute	NC_GLOBAL	projects_0_end_date	String	2017-08
attribute	NC_GLOBAL	projects_0_geolocation	String	Bermuda and wider Caribbean
attribute	NC_GLOBAL	projects_0_name	String	Collaborative Research: Identifying the Role of Basin-scale Climate Variability in the Decline of Atlantic Corals
attribute	NC_GLOBAL	projects_0_project_nid	String	655204
attribute	NC_GLOBAL	projects_0_start_date	String	2015-09
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	20.9373
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	Coral Growth Parameters Quantified by Computerized Tomography (CT) for Growth Rate (cm/yr), Density (g/cm3), and Calcification Rates (g/cm2/yr), Percent Volume Erosion (%), Measured Bioerosion Rate (mg/ cm2/ yr), Predicted Bioerosion Rate (mg/cm2/ yr) Based on DeCarlo et al (2015).
attribute	NC_GLOBAL	title	String	[Vulnerability of coral reefs to bioerosion] - Vulnerability of coral reefs to bioerosion from land-based sources of pollution using parameters quantified by computerized tomography. (Collaborative Research: Identifying the Role of Basin-scale Climate Variability in the Decline of Atlantic Corals)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	-156.6935
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Date		String
attribute	Date	bcodmo_name	String	date
attribute	Date	description	String	Date of collection; yyyy-mm-dd
attribute	Date	long_name	String	Date
attribute	Date	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	Date	source_name	String	Date
attribute	Date	time_precision	String	1970-01-01
attribute	Date	units	String	unitless
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	20.9373, 20.9451
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	-156.6935, -156.6931
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Logitude
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	Sample_ID		String
attribute	Sample_ID	bcodmo_name	String	sample
attribute	Sample_ID	description	String	Sample ID number
attribute	Sample_ID	long_name	String	Sample ID
attribute	Sample_ID	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	Sample_ID	units	String	unitless
variable	Core_Length		byte
attribute	Core_Length	_FillValue	byte	127
attribute	Core_Length	actual_range	byte	18, 50
attribute	Core_Length	bcodmo_name	String	depth_core
attribute	Core_Length	description	String	Core length
attribute	Core_Length	long_name	String	Core Length
attribute	Core_Length	units	String	centimeters
variable	depth		double
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	_FillValue	double	NaN
attribute	depth	actual_range	double	1.0, 3.0
attribute	depth	axis	String	Z
attribute	depth	bcodmo_name	String	depth
attribute	depth	description	String	Water depth
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Water Depth
attribute	depth	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/DEPH/
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	Lifespan		byte
attribute	Lifespan	_FillValue	byte	127
attribute	Lifespan	actual_range	byte	21, 43
attribute	Lifespan	bcodmo_name	String	age
attribute	Lifespan	description	String	Life span
attribute	Lifespan	long_name	String	Lifespan
attribute	Lifespan	units	String	years
variable	Tissue_thickness		float
attribute	Tissue_thickness	_FillValue	float	NaN
attribute	Tissue_thickness	actual_range	float	4.0, 5.6
attribute	Tissue_thickness	bcodmo_name	String	width
attribute	Tissue_thickness	description	String	Tissue thickness
attribute	Tissue_thickness	long_name	String	Tissue Thickness
attribute	Tissue_thickness	units	String	milimeters
variable	Growth_rate		float
attribute	Growth_rate	_FillValue	float	NaN
attribute	Growth_rate	actual_range	float	0.69, 1.17
attribute	Growth_rate	bcodmo_name	String	growth
attribute	Growth_rate	description	String	Growth rate
attribute	Growth_rate	long_name	String	Growth Rate
attribute	Growth_rate	units	String	centimeters per year
variable	Density		float
attribute	Density	_FillValue	float	NaN
attribute	Density	actual_range	float	0.99, 1.15
attribute	Density	bcodmo_name	String	density
attribute	Density	description	String	Density
attribute	Density	long_name	String	Density
attribute	Density	units	String	grams per centimeters cubed
variable	Bioerosion_volume		float
attribute	Bioerosion_volume	_FillValue	float	NaN
attribute	Bioerosion_volume	actual_range	float	2.2, 14.6
attribute	Bioerosion_volume	bcodmo_name	String	volume
attribute	Bioerosion_volume	description	String	Bioerosion volume
attribute	Bioerosion_volume	long_name	String	Bioerosion Volume
attribute	Bioerosion_volume	units	String	percent
variable	Calcification_rate		float
attribute	Calcification_rate	_FillValue	float	NaN
attribute	Calcification_rate	actual_range	float	0.67, 1.1
attribute	Calcification_rate	bcodmo_name	String	calcification
attribute	Calcification_rate	description	String	Calcification rate
attribute	Calcification_rate	long_name	String	Calcification Rate
attribute	Calcification_rate	units	String	grams per square centimeter per year
variable	Bioerosion_rate		float
attribute	Bioerosion_rate	_FillValue	float	NaN
attribute	Bioerosion_rate	actual_range	float	22.58, 99.15
attribute	Bioerosion_rate	bcodmo_name	String	unknown
attribute	Bioerosion_rate	description	String	Bioerosion rate
attribute	Bioerosion_rate	long_name	String	Bioerosion Rate
attribute	Bioerosion_rate	units	String	miligrams per square centimeter per year
variable	delta_N_15		float
attribute	delta_N_15	_FillValue	float	NaN
attribute	delta_N_15	actual_range	float	7.5, 17.08
attribute	delta_N_15	bcodmo_name	String	d15N_bio
attribute	delta_N_15	description	String	Coral tissue nitrogen isotope
attribute	delta_N_15	long_name	String	Delta N 15
attribute	delta_N_15	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/IRBO/
attribute	delta_N_15	units	String	per mil
variable	delta_N_15_error		float
attribute	delta_N_15_error	_FillValue	float	NaN
attribute	delta_N_15_error	actual_range	float	0.12, 1.76
attribute	delta_N_15_error	bcodmo_name	String	d15N_bio
attribute	delta_N_15_error	colorBarMaximum	double	50.0
attribute	delta_N_15_error	colorBarMinimum	double	0.0
attribute	delta_N_15_error	description	String	Standard error for coral tissue nitrogen isotope
attribute	delta_N_15_error	long_name	String	Delta N 15 Error
attribute	delta_N_15_error	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/IRBO/
attribute	delta_N_15_error	units	String	per mil

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.