ERDDAP > info > bcodmo_dataset_775391

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[AE1910 MOCNESS Nets] - MOCNESS net data from R/V Atlantic Explorer cruise AE1910 during May 2019 (Collaborative Research: Diel physiological rhythms in a tropical oceanic copepod)		I   M	background			BCO-DMO	bcodmo_dataset_775391

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	The MOCNESS was oddly configured for this cruise. It was being powered by the new SIO system rather than the BESS instrumentation. All of the typical sensors had, however, been removed to support the use of a closing cod end system. Consequently the program did not calculate volume filtered (which you can calculate by multiplying flow counts by 5.8). Additionally there were some electronics errors (cast 5 and 6). These successfully captured organisms, but we flew the net blind.
attribute	NC_GLOBAL	awards_0_award_nid	String	764113
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1829318
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1829318
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	awards_1_award_nid	String	764119
attribute	NC_GLOBAL	awards_1_award_number	String	OCE-1829378
attribute	NC_GLOBAL	awards_1_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1829378
attribute	NC_GLOBAL	awards_1_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_1_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_1_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_1_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_1_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	MOCNESS Net Data from R/V Atlantic Explorer cruise AE1910 PI: Amy Maas (BIOS) Co-PIs: Leocadio Blanco-Bercial (BIOS) & Ann Tarrant (WHOI) Version date: 15-August-2019 NOTE: There were some electronics errors (cast 5 and 6). These successfully captured organisms, but we flew the net blind. For net 5 there is a net file, but for tow 6 even the net file was empty.
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2019-08-14T20:39:01Z
attribute	NC_GLOBAL	date_modified	String	2019-09-25T16:38:40Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.775391.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/775391
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	MOC1
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	1 m MOCNESS, 150 micron mesh nets
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	775545
attribute	NC_GLOBAL	instruments_0_description	String	The Multiple Opening/Closing Net and Environmental Sensing System or MOCNESS is a family of net systems based on the Tucker Trawl principle. The MOCNESS-1 carries nine 1-m2 nets usually of 335 micrometer mesh and is intended for use with the macrozooplankton. All nets are black to reduce contrast with the background. A motor/toggle release assembly is mounted on the top portion of the frame and stainless steel cables with swaged fittings are used to attach the net bar to the toggle release. A stepping motor in a pressure compensated case filled with oil turns the escapement crankshaft of the toggle release which sequentially releases the nets to an open then closed position on command from the surface. -- from the MOCNESS Operations Manual (1999 + 2003).
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L22/current/NETT0097/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	MOCNESS1
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	437
attribute	NC_GLOBAL	instruments_0_supplied_name	String	MOCNESS
attribute	NC_GLOBAL	keywords	String	angle, bco, bco-dmo, biological, chemical, correction, cruise, data, dataset, date, date_start, dmo, erddap, iso, management, oceanography, office, preliminary, Pres, pressure, start, temperature, time, time2, time_start, tow, vol
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/775391/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/775391
attribute	NC_GLOBAL	param_mapping	String	{'775391': {'ISO_DateTime_UTC_start': 'flag - time', 'Pres': 'flag - depth'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/775391/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Bermuda Institute of Ocean Sciences
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	BIOS
attribute	NC_GLOBAL	people_0_person_name	String	Leocadio Blanco-Bercial
attribute	NC_GLOBAL	people_0_person_nid	String	51108
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Bermuda Institute of Ocean Sciences
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	BIOS
attribute	NC_GLOBAL	people_1_person_name	String	Amy Maas
attribute	NC_GLOBAL	people_1_person_nid	String	51589
attribute	NC_GLOBAL	people_1_role	String	Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_2_person_name	String	Ann M. Tarrant
attribute	NC_GLOBAL	people_2_person_nid	String	51430
attribute	NC_GLOBAL	people_2_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_2_role_type	String	originator
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Shannon Rauch
attribute	NC_GLOBAL	people_3_person_nid	String	51498
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Zooplankton Diel Rhythm
attribute	NC_GLOBAL	projects_0_acronym	String	Zooplankton Diel Rhythm
attribute	NC_GLOBAL	projects_0_description	String	NSF Award Abstract: The daily vertical migration (DMV) of zooplankton and fish across hundreds of meters between shallow and deep waters is a predominant pattern in pelagic ecosystems. This migration has consequences for biogeochemical cycling as it moves a substantial portion of fixed carbon and nitrogen (an estimated 15 to 40 % of the total global organic export) from the surface directly to depth where it feeds the midwater food chain and sequesters nutrients away from atmospheric mixing. Estimates and predictions of these fluxes are, however, poorly understood at present. New observations have shown that one source of uncertainty is due to the assumption that metabolic rates and processes do not vary over the course of the day, except based on changes in temperature and oxygen availability. Rates are, however, also driven by differences in feeding, swimming behavior, and underlying circadian cycles. The objective of this project is to improve the ability of scientists to understand and predict zooplankton contributions to the movement of carbon and nitrogen in the ocean by detailing daily changes in physiological processes of these organisms. By producing a set of respiration and excretion measurements over a daily time series, paired with simultaneously collected gene and protein expression patterns for an abundant vertically migratory species, the investigators will provide unprecedented and predictive insight into how changes in the environment affect the contribution of zooplankton to biogeochemical fluxes. The sampling design of the project will advance discovery and understanding by providing hands-on training opportunities to at least two undergraduate researchers. The project will broaden dissemination of the research via development of an educational module, focusing on rhythms in the ocean. The module will initially be piloted with the Bermuda Institute of Ocean Sciences (BIOS) summer camp students and then disseminated through the BIOS Explorer program, the Teacher Resources Page on the BIOS website, and published in a peer-reviewed educational journal. This project will characterize the metabolic consequences of daily physiological rhythms and DVM for a model zooplankton species, the abundant subtropical copepod Pleuromamma xiphias. Flux processes (oxygen consumption, carbon dioxide production, production of ammonium and fecal pellet production) will be interrogated using directed experiments testing the effects of temperature, feeding and circadian cycle. Circadian cycling will further be examined using transcriptomic and proteomic profiling. These experiments will be related to field samples taken at 6-h intervals over the course of the diel migration using an integrated suite of molecular and organismal metrics. Combined organismal, transcriptomic and proteomic profiles will provide an understanding of which metabolic pathways and associated flux products vary in relation to particular environmental variables (food, light cycle, temperature). Diel variation in metabolic rates will also be assessed across seasons and species using other important migratory groups (pteropod, euphausiid, and another copepod). The metabolic data will then be contextualized with abundance estimates from archived depth-stratified tows to allow scaling to community-level patterns and will be used to improve calculations of zooplankton contribution to particulate organic carbon, nitrogen and respiratory active flux. The results of this study will both improve our flux estimates and provide predictive insight into how various environmental variables influence the underlying physiological pathways generating carbon and nitrogen flux. Cruise reports are available from the completed cruises:SD031019AE1910AE1918
attribute	NC_GLOBAL	projects_0_end_date	String	2021-09
attribute	NC_GLOBAL	projects_0_geolocation	String	Bermuda
attribute	NC_GLOBAL	projects_0_name	String	Collaborative Research: Diel physiological rhythms in a tropical oceanic copepod
attribute	NC_GLOBAL	projects_0_project_nid	String	764114
attribute	NC_GLOBAL	projects_0_start_date	String	2018-10
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	cruise
attribute	NC_GLOBAL	summary	String	MOCNESS net data from R/V Atlantic Explorer cruise AE1910 during May 2019.
attribute	NC_GLOBAL	time_coverage_end	String	2019-05-23T15:56:04Z
attribute	NC_GLOBAL	time_coverage_start	String	2019-05-20T12:25:18Z
attribute	NC_GLOBAL	title	String	[AE1910 MOCNESS Nets] - MOCNESS net data from R/V Atlantic Explorer cruise AE1910 during May 2019 (Collaborative Research: Diel physiological rhythms in a tropical oceanic copepod)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	tow		String
attribute	tow	bcodmo_name	String	tow
attribute	tow	description	String	Tow number (based on file name)
attribute	tow	long_name	String	Tow
attribute	tow	units	String	unitless
variable	date_start		String
attribute	date_start	bcodmo_name	String	date
attribute	date_start	description	String	Date UTC at start of tow (from file header); format: yyyy-mm-dd
attribute	date_start	long_name	String	Date Start
attribute	date_start	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	date_start	time_precision	String	1970-01-01
attribute	date_start	units	String	unitless
variable	time_start		String
attribute	time_start	bcodmo_name	String	time
attribute	time_start	description	String	Time UTC at start of tow (from file header); format: hh:mm:ss
attribute	time_start	long_name	String	Time Start
attribute	time_start	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/
attribute	time_start	units	String	unitless
variable	time		double
attribute	time	_CoordinateAxisType	String	Time
attribute	time	actual_range	double	1.558355118E9, 1.558626964E9
attribute	time	axis	String	T
attribute	time	bcodmo_name	String	ISO_DateTime_UTC
attribute	time	description	String	Date and time (UTC) at start of tow formatted ISO8601 standard: yyyy-mm-ddTHH:MM:SS
attribute	time	ioos_category	String	Time
attribute	time	long_name	String	ISO Date Time UTC Start
attribute	time	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/
attribute	time	source_name	String	ISO_DateTime_UTC_start
attribute	time	standard_name	String	time
attribute	time	time_origin	String	01-JAN-1970 00:00:00
attribute	time	time_precision	String	1970-01-01T00:00:00Z
attribute	time	units	String	seconds since 1970-01-01T00:00:00Z
variable	cruise		String
attribute	cruise	bcodmo_name	String	cruise_id
attribute	cruise	description	String	Cruise identifier
attribute	cruise	long_name	String	Cruise
attribute	cruise	units	String	unitless
variable	Date		int
attribute	Date	_FillValue	int	2147483647
attribute	Date	actual_range	int	190520, 190523
attribute	Date	bcodmo_name	String	date
attribute	Date	description	String	Date (UTC); format: yymmdd
attribute	Date	long_name	String	Date
attribute	Date	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	Date	units	String	unitless
variable	time2		String
attribute	time2	bcodmo_name	String	time
attribute	time2	description	String	Time (UTC); format: hhmmss
attribute	time2	long_name	String	Time
attribute	time2	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/
attribute	time2	units	String	unitless
variable	TC		byte
attribute	TC	_FillValue	byte	127
attribute	TC	actual_range	byte	1, 7
attribute	TC	bcodmo_name	String	unknown
attribute	TC	description	String	Trip count (what net it thinks it is)
attribute	TC	long_name	String	Temperature Correction
attribute	TC	units	String	unitless
variable	FC		short
attribute	FC	_FillValue	short	32767
attribute	FC	actual_range	short	0, 562
attribute	FC	bcodmo_name	String	flow
attribute	FC	description	String	Flow count
attribute	FC	long_name	String	FC
attribute	FC	units	String	counts
variable	VOL		float
attribute	VOL	_FillValue	float	NaN
attribute	VOL	actual_range	float	0.0, 0.0
attribute	VOL	bcodmo_name	String	vol_filt
attribute	VOL	description	String	Volume filtered; note: the program did not calculate volume filtered correctly; you can calculate volumen filtered by multiplying flow counts by 5.8.
attribute	VOL	long_name	String	VOL
attribute	VOL	units	String	unitless
variable	Pres		double
attribute	Pres	_FillValue	double	NaN
attribute	Pres	actual_range	double	0.0, 606.1
attribute	Pres	bcodmo_name	String	pressure
attribute	Pres	description	String	Pressure
attribute	Pres	long_name	String	Pressure
attribute	Pres	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/PRESPR01/
attribute	Pres	units	String	millibars (mb)
variable	Angle		float
attribute	Angle	_FillValue	float	NaN
attribute	Angle	actual_range	float	-9999.0, 88.9
attribute	Angle	bcodmo_name	String	angle
attribute	Angle	description	String	Angle of the net
attribute	Angle	long_name	String	Angle
attribute	Angle	missing_value	float	NaN
attribute	Angle	units	String	degrees

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.