ERDDAP > info > bcodmo_dataset_786608

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Reciprocal transplant expt. - irradiance and light attenuation 2017] - Irradiance and estimated light attenuation coefficient, Kd, underwater and onshore in Varadero Reef, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)		I   M	background			BCO-DMO	bcodmo_dataset_786608

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv
attribute	NC_GLOBAL	acquisition_description	String	The Varadero Reef is located south-west of the Cartagena Bay close to the southern strait that connects the Bay to the Caribbean Sea in Colombia (10\u00b018\u201923.3\"N, 75\u00b035\u201908.0\"W). The Bay is a receiving estuary from the Magdalena River through the Canal del Dique, a man-made channel whose construction and operation dates back almost a century. The depth of the particular transplant site in Varadero is 3.5m. Irradiance was monitored for one year (November 2016 - November 2017) at Varadero with cosine-corrected light sensors (Odyssey submersible PAR logger, Dataflow systems, New Zealand), previously cross-calibrated against a manufacturer-calibrated quantum sensor (LI-1400, LI-COR, USA). The light sensors were cleaned and downloaded periodically (every two months or less) to avoid biofouling. Data in which cumulative light signal loss was evident were discarded. In order to estimate the variation of the optical properties of water resulting from the Dique plume dynamics, light data recorded underwater were compared with data simultaneously recorded by another sensor in a site onshore close to Varadero (Fig. 5). With this array, we were able to isolate the variations of irradiance associated with the plume from variations due to cloud coverage. The irradiance synchronously recorded by onshore and underwater loggers was used to estimate the variability of Kd based on the Lambert-Beer\u2019s law: Kd = ln (Ez / E0) / -Z, where Ez is the irradiance recorded underwater, E0 is the irradiance recorded onshore, and Z is the depth at which the underwater sensor was deployed in Varadero (3.5 m). Only data recorded between 7:00 and 17:00 were employed. Odyssey data logging software (Dataflow systems Ltd., Christchurch, New Zealand) was used to manage the logger and data operations. Problem report:\u00a0There are some gaps associated with technical failure of the devices.
attribute	NC_GLOBAL	awards_0_award_nid	String	717027
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1642311
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1642311
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	Michael E. Sieracki
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50446
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	Irradiance and light attenuation, Aug-Nov 2017 Varadero Reef, Colombia PI: M. Medina, R. Iglesias-Prieto, T. Lopez (Penn State) version date: 2020-01-08
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	date_created	String	2020-01-08T20:26:54Z
attribute	NC_GLOBAL	date_modified	String	2020-03-04T21:32:11Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.1575/1912/bco-dmo.786608.1
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/786608
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	Light Meter
attribute	NC_GLOBAL	instruments_0_dataset_instrument_description	String	Used to monitor the light intensity at each site.
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	786615
attribute	NC_GLOBAL	instruments_0_description	String	Light meters are instruments that measure light intensity. Common units of measure for light intensity are umol/m2/s or uE/m2/s (micromoles per meter squared per second or microEinsteins per meter squared per second). (example: LI-COR 250A)
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Light Meter
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	703
attribute	NC_GLOBAL	instruments_0_supplied_name	String	Odyssey submersible PAR logger (Dataflow systems Ltda, Christchurch, New Zealand)
attribute	NC_GLOBAL	instruments_1_dataset_instrument_description	String	Data logger connected to a quantum sensor was used to calibrate the Odyssey sensors
attribute	NC_GLOBAL	instruments_1_dataset_instrument_nid	String	786616
attribute	NC_GLOBAL	instruments_1_description	String	Electronic devices that record data over time or in relation to location either with a built-in instrument or sensor or via external instruments and sensors.
attribute	NC_GLOBAL	instruments_1_instrument_name	String	Data Logger
attribute	NC_GLOBAL	instruments_1_instrument_nid	String	731353
attribute	NC_GLOBAL	instruments_1_supplied_name	String	LI-1400 (LI-COR, Nebraska, USA)
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, data, dataset, date, dmo, erddap, est, irradiance, Irradiance_onshore, Irradiance_uw, iso, ISO_DateTime_UTC, Kd_est, local, management, oceanography, office, onshore, preliminary, time, time2
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/786608/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/786608
attribute	NC_GLOBAL	param_mapping	String	{'786608': {'ISO_DateTime_UTC': 'flag - time'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/786608/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Pennsylvania State University
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	PSU
attribute	NC_GLOBAL	people_0_person_name	String	Mónica Medina
attribute	NC_GLOBAL	people_0_person_nid	String	472486
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Pennsylvania State University
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	PSU
attribute	NC_GLOBAL	people_1_person_name	String	Roberto Iglesias-Prieto
attribute	NC_GLOBAL	people_1_person_nid	String	717031
attribute	NC_GLOBAL	people_1_role	String	Co-Principal Investigator
attribute	NC_GLOBAL	people_1_role_type	String	originator
attribute	NC_GLOBAL	people_2_affiliation	String	Pennsylvania State University
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	PSU
attribute	NC_GLOBAL	people_2_person_name	String	Tomás Lopez Lodoño
attribute	NC_GLOBAL	people_2_person_nid	String	732860
attribute	NC_GLOBAL	people_2_role	String	Contact
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	people_3_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_3_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_3_person_name	String	Nancy Copley
attribute	NC_GLOBAL	people_3_person_nid	String	50396
attribute	NC_GLOBAL	people_3_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_3_role_type	String	related
attribute	NC_GLOBAL	project	String	Varadero Reef
attribute	NC_GLOBAL	projects_0_acronym	String	Varadero Reef
attribute	NC_GLOBAL	projects_0_description	String	NSF Award Abstract: Coral reefs provide invaluable services to coastal communities, but coral populations worldwide are in a state of unprecedented decline. Studying resilient reefs is of primary importance for coral conservation and restoration efforts. A unique natural experiment in coral resilience to stress has been playing out in Cartagena Bay, Colombia since the Spanish conquistadors diverted the Magadalena River into the Bay in 1582. Varadero Reef at the southern mouth of the Bay has survived centuries of environmental insults and changing conditions with up to 80% coral cover. This reef provides an ideal system to test biological robustness theory. Given that Varadero is a highly perturbed system, we hypothesize that while likely more robust to perturbation than nearby pristine reefs, it will be less physiologically efficient. Some of the large star coral colonies (Orbicella faveolata) at this site have existed since before the construction of the Canal del Dique. These coral specimens contain invaluable information regarding the conditions of the Magdalena River wathershed and its construction in the XIV century. Changes in turbidity of the plume associated with the urban industrial and agricultural development of Colombia can be documented as variations in calcification rates and changes in the microstructure of the skeleton. The Colombian government has announced the approval for the construction of a shipping channel that will go right over this reef, with the goal to start dredging as early as Fall 2016 or early 2017. The RAPID funding mechanism would enable immediate collection of data and information of why this reef has survived centuries of environmental stress that can shed light on what genotype combinations of coral and its microbial constituents will fare better in similar conditions at other reef locations around the world. Coral reef conservation biology will benefit from this study by generating data for the development of stress diagnostic tools to identify resilient corals. This project will help broaden participation in science by training a diverse cohort of students to work effectively in the global arena while fostering productive collaborations with several Colombian researchers and educational institutions. Students will also gain cultural empathy and sensitivity through direct engagement with the members of society who are most directly impacted by coral reef degradation (e.g. fishermen). Student researchers from Penn State University will work alongside their Colombian counterparts to develop a series of bilingual blog posts to record the cultural and scientific aspects of this project's research expeditions. The blog postings will be submitted for wide dissemination to the Smithsonian's Ocean Portal where Penn State students have published in the past. An educational coral kit developed by the Medina Lab and extensively tested in schools in the US has been translated into Spanish and will be used in local schools in Cartagena and vicinities. All expedition data and metadata will be incorporated into the Global Coral Microbiome Project's interactive web portal, a responsive outreach tool allows researchers, students and/or teachers to access a wealth of information about every coral colony we sample and to virtually explore coral reefs around the world from any internet-enabled device. This research will generate information to understand functional traits related to symbioses stability under different perturbation regimes. Comparative analyses of microbiome modifications generated during the reciprocal transplantation will allow us to document possible differential responses of the holobionts to acute and chronic stressors relative to corals not exposed to significant levels of perturbation. The development of local bio-optical models of coral calcification and the characterization of the coral holobiont will permit the distinction between the effects in calcification attributed to local turbidity from those that can be ;attributed to differences in host genotype and/or microbial community composition and function. The information recorded in coral skeletons can be used to reconstruct the rates of agricultural, industrial and urban development of Colombia through the last 5 centuries as changes in the turbidity of the effluent of the Magdalena River.
attribute	NC_GLOBAL	projects_0_end_date	String	2018-06
attribute	NC_GLOBAL	projects_0_geolocation	String	Caribbean Sea (10°18’10”N, 75°34’ 55”W)
attribute	NC_GLOBAL	projects_0_name	String	RAPID: Coral robustness: lessons from an "improbable" reef
attribute	NC_GLOBAL	projects_0_project_nid	String	717028
attribute	NC_GLOBAL	projects_0_start_date	String	2016-07
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	summary	String	This dataset contains the primary data of irradiance recorded underwater and onshore and the estimated light attenuation coefficient, Kd, based on these data in Varadero Reef. The irradiance recorded synchronously onshore and underwater were used to estimate the variability of the light attenuation coefficient (Kd) resulting from temporal variation of the optical properties of water.
attribute	NC_GLOBAL	time_coverage_end	String	2017-11-28T22:00:00Z
attribute	NC_GLOBAL	time_coverage_start	String	2017-08-12T12:00:00Z
attribute	NC_GLOBAL	title	String	[Reciprocal transplant expt. - irradiance and light attenuation 2017] - Irradiance and estimated light attenuation coefficient, Kd, underwater and onshore in Varadero Reef, 2017 (RAPID: Coral robustness: lessons from an "improbable" reef)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.3
variable	Date		String
attribute	Date	bcodmo_name	String	date
attribute	Date	description	String	sampling date
attribute	Date	long_name	String	Date
attribute	Date	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ADATAA01/
attribute	Date	time_precision	String	1970-01-01
attribute	Date	units	String	unitless
variable	time2		String
attribute	time2	bcodmo_name	String	time
attribute	time2	description	String	sampling time
attribute	time2	long_name	String	Time
attribute	time2	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/AHMSAA01/
attribute	time2	units	String	unitless
variable	DateTimeLocal		String
attribute	DateTimeLocal	bcodmo_name	String	ISO_DateTime_Local
attribute	DateTimeLocal	description	String	sampling date and time
attribute	DateTimeLocal	long_name	String	Date Time Local
attribute	DateTimeLocal	source_name	String	DateTimeLocal
attribute	DateTimeLocal	time_precision	String	1970-01-01T00:00Z
attribute	DateTimeLocal	units	String	unitless
variable	Irradiance_uw		float
attribute	Irradiance_uw	_FillValue	float	NaN
attribute	Irradiance_uw	actual_range	float	0.11, 406.76
attribute	Irradiance_uw	bcodmo_name	String	irradiance
attribute	Irradiance_uw	description	String	light intensity underwater
attribute	Irradiance_uw	long_name	String	Irradiance Uw
attribute	Irradiance_uw	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/VSRW/
attribute	Irradiance_uw	units	String	micromol quanta meter^-2 second^-1
variable	Irradiance_onshore		float
attribute	Irradiance_onshore	_FillValue	float	NaN
attribute	Irradiance_onshore	actual_range	float	13.12, 2093.96
attribute	Irradiance_onshore	bcodmo_name	String	irradiance
attribute	Irradiance_onshore	description	String	light intensity onshore
attribute	Irradiance_onshore	long_name	String	Irradiance Onshore
attribute	Irradiance_onshore	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/VSRW/
attribute	Irradiance_onshore	units	String	micromol quanta meter^-2 second^-1
variable	Kd_est		float
attribute	Kd_est	_FillValue	float	NaN
attribute	Kd_est	actual_range	float	0.34, 2.15
attribute	Kd_est	bcodmo_name	String	beam_cp
attribute	Kd_est	description	String	estimated light attenuation coefficient Kd
attribute	Kd_est	long_name	String	Kd Est
attribute	Kd_est	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/ATTNZZ01/
attribute	Kd_est	units	String	meter^-1
variable	time		double
attribute	time	_CoordinateAxisType	String	Time
attribute	time	actual_range	double	1.5025392E9, 1.5119064E9
attribute	time	axis	String	T
attribute	time	bcodmo_name	String	ISO_DateTime_UTC
attribute	time	description	String	date and time formatted is ISO: yyyy-mm-ddTHH:MM:SSZ
attribute	time	ioos_category	String	Time
attribute	time	long_name	String	ISO Date Time UTC
attribute	time	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/DTUT8601/
attribute	time	standard_name	String	time
attribute	time	time_origin	String	01-JAN-1970 00:00:00
attribute	time	time_precision	String	1970-01-01T00:00:00Z
attribute	time	units	String	seconds since 1970-01-01T00:00:00Z

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.