ERDDAP > info > bcodmo_dataset_810902

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
	set	data	graph		files	public	[IODP360 - CHNS analyses] - Supplementary Table 1: Results of CHNS analyses in rock samples at different depths and sample images. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta- omics and Culturing Approaches)		F   I   M	background			BCO-DMO	bcodmo_dataset_810902

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	access_formats	String	.htmlTable,.csv,.json,.mat,.nc,.tsv,.esriCsv,.geoJson
attribute	NC_GLOBAL	acquisition_description	String	Powderized rock material 462 from each sample (produced in the laminar flow hood on the JOIDES Resolution using a sterile mortar and pestle) was immediately transferred to sterile, muffled glass containers and stored in a desiccator until analysis of carbon and nitrogen according to established methods. Briefly, samples were weighed into methanol rinsed silver boats (4 x 6 mm, Costech). 96-well glass plates (combusted 4 hrs at 450\u00b0C) holding these samples were placed in a vacuum desiccator that also contained an open dish with about 50 mL fresh, concentrated (12N) HCl. An inverted crystallization dish was placed over the samplesto protect them from water condensation. The desiccator was closed and pumped out with an airdriven aspirator, to a reading of about ~ 0.5 atm and the desiccator was placed in an oven kept between 60 and 65 \u00b0C. Acidification was allowed to run for 60 to 72 hours. When acidification was complete, the samples were removed and set in the oven to dry (60-65 \u00b0C), and then placed in a vacuum desiccator charged with indicating silica gel (Fisher S162-500, activated by heating above 220 \u00b0C for several hours) and pumped down again and dried for about 24 hours. \u00a0
attribute	NC_GLOBAL	awards_0_award_nid	String	709555
attribute	NC_GLOBAL	awards_0_award_number	String	OCE-1658031
attribute	NC_GLOBAL	awards_0_data_url	String	http://www.nsf.gov/awardsearch/showAward.do?AwardNumber=1658031
attribute	NC_GLOBAL	awards_0_funder_name	String	NSF Division of Ocean Sciences
attribute	NC_GLOBAL	awards_0_funding_acronym	String	NSF OCE
attribute	NC_GLOBAL	awards_0_funding_source_nid	String	355
attribute	NC_GLOBAL	awards_0_program_manager	String	David L. Garrison
attribute	NC_GLOBAL	awards_0_program_manager_nid	String	50534
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	comment	String	SUpplementary Table 1: CHNS analysis PI: Virginia Edgcomb Data Version 1: 2020-05-11
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_type	String	institution
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	data_source	String	extract_data_as_tsv version 2.3 19 Dec 2019
attribute	NC_GLOBAL	dataset_current_state	String	Final and no updates
attribute	NC_GLOBAL	date_created	String	2020-05-08T12:26:32Z
attribute	NC_GLOBAL	date_modified	String	2020-07-08T16:51:07Z
attribute	NC_GLOBAL	defaultDataQuery	String	&time<now
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.810902.1
attribute	NC_GLOBAL	Easternmost_Easting	double	57.278183
attribute	NC_GLOBAL	geospatial_lat_max	double	-32.70567
attribute	NC_GLOBAL	geospatial_lat_min	double	-32.70567
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	57.278183
attribute	NC_GLOBAL	geospatial_lon_min	double	57.278183
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	747.7
attribute	NC_GLOBAL	geospatial_vertical_min	double	10.7
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/810902
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	instruments_0_acronym	String	IR Mass Spec
attribute	NC_GLOBAL	instruments_0_dataset_instrument_nid	String	810915
attribute	NC_GLOBAL	instruments_0_description	String	The Isotope-ratio Mass Spectrometer is a particular type of mass spectrometer used to measure the relative abundance of isotopes in a given sample (e.g. VG Prism II Isotope Ratio Mass-Spectrometer).
attribute	NC_GLOBAL	instruments_0_instrument_external_identifier	String	https://vocab.nerc.ac.uk/collection/L05/current/LAB16/
attribute	NC_GLOBAL	instruments_0_instrument_name	String	Isotope-ratio Mass Spectrometer
attribute	NC_GLOBAL	instruments_0_instrument_nid	String	469
attribute	NC_GLOBAL	instruments_0_supplied_name	String	DeltaPlus isotope ratio mass spectrometer
attribute	NC_GLOBAL	instruments_1_acronym	String	Costech ECS 4010
attribute	NC_GLOBAL	instruments_1_dataset_instrument_nid	String	810914
attribute	NC_GLOBAL	instruments_1_description	String	The ECS 4010 Nitrogen / Protein Analyzer is an elemental combustion analyser for CHNSO elemental analysis and Nitrogen / Protein determination. The GC oven and separation column have a temperature range of 30-110 degC, with control of +/- 0.1 degC.
attribute	NC_GLOBAL	instruments_1_instrument_name	String	Costech International Elemental Combustion System (ECS) 4010
attribute	NC_GLOBAL	instruments_1_instrument_nid	String	793023
attribute	NC_GLOBAL	instruments_1_supplied_name	String	Costech 4010 Elemental Analyzer
attribute	NC_GLOBAL	keywords	String	bco, bco-dmo, biological, chemical, clay, Clay_OH, data, dataset, depth, dmo, erddap, latitude, longitude, management, observations, oceanography, office, picture, preliminary, ratio, Ratio_13C_12C, reference, Reference_Picture, sample, Sample_ID, toc, ton, total, Total_C_Total_N
attribute	NC_GLOBAL	license	String	https://www.bco-dmo.org/dataset/810902/license
attribute	NC_GLOBAL	metadata_source	String	https://www.bco-dmo.org/api/dataset/810902
attribute	NC_GLOBAL	Northernmost_Northing	double	-32.70567
attribute	NC_GLOBAL	param_mapping	String	{'810902': {'Latitude': 'flag - latitude', 'Depth': 'flag - depth', 'Longitude': 'flag - longitude'}}
attribute	NC_GLOBAL	parameter_source	String	https://www.bco-dmo.org/mapserver/dataset/810902/parameters
attribute	NC_GLOBAL	people_0_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_0_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_0_person_name	String	Virginia P. Edgcomb
attribute	NC_GLOBAL	people_0_person_nid	String	51284
attribute	NC_GLOBAL	people_0_role	String	Principal Investigator
attribute	NC_GLOBAL	people_0_role_type	String	originator
attribute	NC_GLOBAL	people_1_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_1_affiliation_acronym	String	WHOI
attribute	NC_GLOBAL	people_1_person_name	String	Virginia P. Edgcomb
attribute	NC_GLOBAL	people_1_person_nid	String	51284
attribute	NC_GLOBAL	people_1_role	String	Contact
attribute	NC_GLOBAL	people_1_role_type	String	related
attribute	NC_GLOBAL	people_2_affiliation	String	Woods Hole Oceanographic Institution
attribute	NC_GLOBAL	people_2_affiliation_acronym	String	WHOI BCO-DMO
attribute	NC_GLOBAL	people_2_person_name	String	Karen Soenen
attribute	NC_GLOBAL	people_2_person_nid	String	748773
attribute	NC_GLOBAL	people_2_role	String	BCO-DMO Data Manager
attribute	NC_GLOBAL	people_2_role_type	String	related
attribute	NC_GLOBAL	project	String	Subseafloor Lower Crust Microbiology
attribute	NC_GLOBAL	projects_0_acronym	String	Subseafloor Lower Crust Microbiology
attribute	NC_GLOBAL	projects_0_description	String	NSF abstract: The lower ocean crust has remained largely unexplored and represents one of the last frontiers for biological exploration on Earth. Preliminary data indicate an active subsurface biosphere in samples of the lower oceanic crust collected from Atlantis Bank in the SW Indian Ocean as deep as 790 m below the seafloor. Even if life exists in only a fraction of the habitable volume where temperatures permit and fluid flow can deliver carbon and energy sources, an active lower oceanic crust biosphere would have implications for deep carbon budgets and yield insights into microbiota that may have existed on early Earth. This is all of great interest to other research disciplines, educators, and students alike. A K-12 education program will capitalize on groundwork laid by outreach collaborator, A. Martinez, a 7th grade teacher in Eagle Pass, TX, who sailed as outreach expert on Drilling Expedition 360. Martinez works at a Title 1 school with ~98% Hispanic and ~2% Native American students and a high number of English Language Learners and migrants. Annual school visits occur during which the project investigators present hands on-activities introducing students to microbiology, and talks on marine microbiology, the project, and how to pursue science related careers. In addition, monthly Skype meetings with students and PIs update them on project progress. Students travel to the University of Texas Marine Science Institute annually, where they get a campus tour and a 3-hour cruise on the R/V Katy, during which they learn about and help with different oceanographic sampling approaches. The project partially supports two graduate students, a Woods Hole undergraduate summer student, the participation of multiple Texas A+M undergraduate students, and 3 principal investigators at two institutions, including one early career researcher who has not previously received NSF support of his own. Given the dearth of knowledge of the lower oceanic crust, this project is poised to transform our understanding of life in this vast environment. The project assesses metabolic functions within all three domains of life in this crustal biosphere, with a focus on nutrient cycling and evaluation of connections to other deep marine microbial habitats. The lower ocean crust represents a potentially vast biosphere whose microbial constituents and the biogeochemical cycles they mediate are likely linked to deep ocean processes through faulting and subsurface fluid flow. Atlantis Bank represents a tectonic window that exposes lower oceanic crust directly at the seafloor. This enables seafloor drilling and research on an environment that can transform our understanding of connections between the deep subseafloor biosphere and the rest of the ocean. Preliminary analysis of recovered rocks from Expedition 360 suggests the interaction of seawater with the lower oceanic crust creates varied geochemical conditions capable of supporting diverse microbial life by providing nutrients and chemical energy. This project is the first interdisciplinary investigation of the microbiology of all 3 domains of life in basement samples that combines diversity and "meta-omics" analyses, analysis of nutrient addition experiments, high-throughput culturing and physiological analyses of isolates, including evaluation of their ability to utilize specific carbon sources, Raman spectroscopy, and lipid biomarker analyses. Comparative genomics are used to compare genes and pathways relevant to carbon cycling in these samples to data from published studies of other deep-sea environments. The collected samples present a rare and time-sensitive opportunity to gain detailed insights into microbial life, available carbon and energy sources for this life, and of dispersal of microbiota and connections in biogeochemical processes between the lower oceanic crust and the overlying aphotic water column. About the study area: The International Ocean Discovery Program (IODP) Expedition 360 explored the lower crust at Atlantis Bank, a 12 Ma oceanic core complex on the ultraslow-spreading SW Indian Ridge. This oceanic core complex represents a tectonic window that exposes lower oceanic crust and mantle directly at the seafloor, and the expedition provided an unprecedented opportunity to access this habitat in the Indian Ocean.
attribute	NC_GLOBAL	projects_0_end_date	String	2020-01
attribute	NC_GLOBAL	projects_0_geolocation	String	SW Indian Ridge, Indian Ocean
attribute	NC_GLOBAL	projects_0_name	String	Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches
attribute	NC_GLOBAL	projects_0_project_nid	String	709556
attribute	NC_GLOBAL	projects_0_start_date	String	2017-02
attribute	NC_GLOBAL	publisher_name	String	Biological and Chemical Oceanographic Data Management Office (BCO-DMO)
attribute	NC_GLOBAL	publisher_type	String	institution
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	-32.70567
attribute	NC_GLOBAL	standard_name_vocabulary	String	CF Standard Name Table v55
attribute	NC_GLOBAL	subsetVariables	String	latitude,longitude
attribute	NC_GLOBAL	summary	String	Results of CHNS analyses in rock samples at different depths and sample images taken on board of the R/V JOIDES Resolution between November 30, 2015 and January 30, 2016
attribute	NC_GLOBAL	title	String	[IODP360 - CHNS analyses] - Supplementary Table 1: Results of CHNS analyses in rock samples at different depths and sample images. (Collaborative Research: Delineating The Microbial Diversity and Cross-domain Interactions in The Uncharted Subseafloor Lower Crust Using Meta-omics and Culturing Approaches)
attribute	NC_GLOBAL	version	String	1
attribute	NC_GLOBAL	Westernmost_Easting	double	57.278183
attribute	NC_GLOBAL	xml_source	String	osprey2erddap.update_xml() v1.5
variable	Sample_ID		String
attribute	Sample_ID	bcodmo_name	String	sample
attribute	Sample_ID	description	String	Sample ID
attribute	Sample_ID	long_name	String	Sample ID
attribute	Sample_ID	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P02/current/ACYC/
attribute	Sample_ID	units	String	unitless
variable	depth		double
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	_FillValue	double	NaN
attribute	depth	actual_range	double	10.7, 747.7
attribute	depth	axis	String	Z
attribute	depth	bcodmo_name	String	depth
attribute	depth	colorBarMaximum	double	8000.0
attribute	depth	colorBarMinimum	double	-8000.0
attribute	depth	colorBarPalette	String	TopographyDepth
attribute	depth	description	String	Depth below sea floor
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/DEPH/
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	TOC		float
attribute	TOC	_FillValue	float	NaN
attribute	TOC	actual_range	float	0.006, 0.018
attribute	TOC	bcodmo_name	String	TOC
attribute	TOC	description	String	Total Organic Carbon
attribute	TOC	long_name	String	TOC
attribute	TOC	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/CORGCOTX/
attribute	TOC	units	String	percentage (%)
variable	TON		String
attribute	TON	bcodmo_name	String	TON
attribute	TON	description	String	Total Organic Nitrogen - bd = below detection limit
attribute	TON	long_name	String	TON
attribute	TON	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/NTOTZZZZ/
attribute	TON	units	String	percentage (%)
variable	Total_C_Total_N		float
attribute	Total_C_Total_N	_FillValue	float	NaN
attribute	Total_C_Total_N	actual_range	float	4.08, 12.4
attribute	Total_C_Total_N	bcodmo_name	String	C_to_N
attribute	Total_C_Total_N	description	String	Total Carbon/Total Nitrogen
attribute	Total_C_Total_N	long_name	String	Total C Total N
attribute	Total_C_Total_N	units	String	percentage (%)
variable	Ratio_13C_12C		float
attribute	Ratio_13C_12C	_FillValue	float	NaN
attribute	Ratio_13C_12C	actual_range	float	-27.8, -23.0
attribute	Ratio_13C_12C	bcodmo_name	String	d13C_DIC
attribute	Ratio_13C_12C	description	String	Ratio of stable isotopes 13C/12C
attribute	Ratio_13C_12C	long_name	String	Ratio 13 C 12 C
attribute	Ratio_13C_12C	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P01/current/D13CMIBX/
attribute	Ratio_13C_12C	units	String	percentage (%)
variable	Clay_OH		float
attribute	Clay_OH	_FillValue	float	NaN
attribute	Clay_OH	actual_range	float	0.0, 1.083
attribute	Clay_OH	bcodmo_name	String	percent composition
attribute	Clay_OH	description	String	wt% OH from clays (150-300°C)
attribute	Clay_OH	long_name	String	Clay OH
attribute	Clay_OH	units	String	percentage (%)
variable	Observations		String
attribute	Observations	bcodmo_name	String	sample_descrip
attribute	Observations	description	String	Lithology and alteration observations
attribute	Observations	long_name	String	Observations
attribute	Observations	units	String	unitless
variable	Reference_Picture		String
attribute	Reference_Picture	bcodmo_name	String	sample_descrip
attribute	Reference_Picture	description	String	Sample image. See "Data Files" section of metadata for .zip file of images.
attribute	Reference_Picture	fileAccessBaseUrl	String	https://datadocs.bco-dmo.org/docs/Subseafloor_Lower_Crust_Microbiology/data_docs/810902/pictures/
attribute	Reference_Picture	long_name	String	Reference Picture
attribute	Reference_Picture	units	String	unitless
variable	latitude		double
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	_FillValue	double	NaN
attribute	latitude	actual_range	double	-32.70567, -32.70567
attribute	latitude	axis	String	Y
attribute	latitude	bcodmo_name	String	latitude
attribute	latitude	colorBarMaximum	double	90.0
attribute	latitude	colorBarMinimum	double	-90.0
attribute	latitude	description	String	Latitude, south is negative
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LATX/
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		double
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	_FillValue	double	NaN
attribute	longitude	actual_range	double	57.278183, 57.278183
attribute	longitude	axis	String	X
attribute	longitude	bcodmo_name	String	longitude
attribute	longitude	colorBarMaximum	double	180.0
attribute	longitude	colorBarMinimum	double	-180.0
attribute	longitude	description	String	Longitude, west is negative
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	nerc_identifier	String	https://vocab.nerc.ac.uk/collection/P09/current/LONX/
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.