ERDDAP > info > bcodmo_dataset_924260_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[NCBI accession numbers for S. arcuata and S. meunieri] - NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieri (Collaborative Research: Combining single-cell and community 'omics' to test hypotheses about diversity and function of planktonic ciliates)		F   I   M	background			BCO-DMO	bcodmo_dataset_924260_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.924260.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-72.06
attribute	NC_GLOBAL	geospatial_lat_max	double	48.5
attribute	NC_GLOBAL	geospatial_lat_min	double	41.31
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-72.06
attribute	NC_GLOBAL	geospatial_lon_min	double	-122.7
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	0.0
attribute	NC_GLOBAL	geospatial_vertical_min	double	0.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/924260
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	48.5
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	41.31
attribute	NC_GLOBAL	summary	String	Many ciliates express their genes only after "unscrambling" them from the genome (portions of the gene may be reversed in the genome or expressed in a different order from what is in the genome). Because the scrambling process would have to be unique to a given species, we can use genome/transcriptome comparisons of single cells to define species boundaries. We showed that two tintinnid ciliate species that look almost identical, Schmidingerella arcuata and S. meunieri, scramble and unscramble their genes differently in the step before transcription, verifying that they represent two distinct biological species. We are also using the single-cell -omics data to better understand the evolutionary relationships (phylogenomics) among tintinnids and related planktonic ciliates. The information in this dataset indicates how to access the sequence data from NCBI.
attribute	NC_GLOBAL	title	String	[NCBI accession numbers for S. arcuata and S. meunieri] - NCBI accession numbers from a study of two tintinnid ciliate species, Schmidingerella arcuata and Schmidingerella meunieri (Collaborative Research: Combining single-cell and community 'omics' to test hypotheses about diversity and function of planktonic ciliates)
attribute	NC_GLOBAL	Westernmost_Easting	double	-122.7
variable	species		String
attribute	species	long_name	String	Species
attribute	species	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	41.31, 48.5
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-122.7, -72.06
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	depth		int
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	actual_range	int	0, 0
attribute	depth	axis	String	Z
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	date		String
attribute	date	long_name	String	Date
attribute	date	units	String	unitless
variable	NCBI_BioprojectProject_ID		String
attribute	NCBI_BioprojectProject_ID	long_name	String	Ncbi_bioprojectproject_id
attribute	NCBI_BioprojectProject_ID	units	String	unitless
variable	Sample_Accession		String
attribute	Sample_Accession	long_name	String	Sample_accession
attribute	Sample_Accession	units	String	unitless
variable	Sequence_Accession		String
attribute	Sequence_Accession	long_name	String	Sequence_accession
attribute	Sequence_Accession	units	String	unitless
variable	sample		String
attribute	sample	long_name	String	Sample
attribute	sample	units	String	unitless
variable	other_links		String
attribute	other_links	long_name	String	Other_links
attribute	other_links	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.