ERDDAP > info > bcodmo_dataset_931469_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)] - Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC) collected during West Florida Coastal Surveys of Seagrass from Feb 2022 to Oct 2023 (Collaborative Research: VIDA Seagrass: Viral Infection Dynamics Among Seagrass)		F   I   M	background			BCO-DMO	bcodmo_dataset_931469_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.931469.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-81.79929
attribute	NC_GLOBAL	geospatial_lat_max	double	29.99911
attribute	NC_GLOBAL	geospatial_lat_min	double	24.56098
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-81.79929
attribute	NC_GLOBAL	geospatial_lon_min	double	-84.35056
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	infoUrl	String	https://www.bco-dmo.org/dataset/931469
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	29.99911
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	24.56098
attribute	NC_GLOBAL	summary	String	This dataset includes Sanger sequence references for 40 Thalassia testudinum samples collected during systematic seagrass surveys from multiple Florida sites, including Terra Ceia Aquatic Preserve, Tampa Bay seagrass sites S1T5 and S3T8 (Lassing Park), Panacea located in the Florida Panhandle, and Florida Keys sites including Bush Key, Garden Key, Marquesas Key, and Key West. We investigated potexvirus distribution in seagrasses using a degenerate reverse transcription polymerase chain reaction (RT-PCR) assay originally designed to capture potexvirus diversity in terrestrial plants. The assay, which implements Potex-5 and Potex-2RC primers, successfully amplified a 584 nt RNA-dependent RNA polymerase (RdRp) fragment from TVX-infected seagrasses. Following validation, we screened 74 opportunistically collected, apparently healthy seagrass samples for potexviruses using this RT-PCR assay. Potexvirus PCR products were successfully generated from Thalassia testudinum samples. Sequences from these products are deposited in NCBI GenBank under the accession numbers OR827692-OR827705, OR854648, OR863396, OR879052-OR879056, and PP430548-PP430571.
attribute	NC_GLOBAL	title	String	[Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC)] - Sanger Sequencing Analysis of Potexvirus PCR Products (Potex-5 and Potex-2RC) collected during West Florida Coastal Surveys of Seagrass from Feb 2022 to Oct 2023 (Collaborative Research: VIDA Seagrass: Viral Infection Dynamics Among Seagrass)
attribute	NC_GLOBAL	Westernmost_Easting	double	-84.35056
variable	sample		String
attribute	sample	long_name	String	Sample
attribute	sample	units	String	unitless
variable	region		String
attribute	region	long_name	String	Region
attribute	region	units	String	unitless
variable	site		String
attribute	site	long_name	String	Site
attribute	site	units	String	unitless
variable	date		String
attribute	date	long_name	String	Date
attribute	date	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	24.56098, 29.99911
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-84.35056, -81.79929
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	sample_host		String
attribute	sample_host	long_name	String	Sample_host
attribute	sample_host	units	String	unitless
variable	Aphia_id		String
attribute	Aphia_id	long_name	String	Aphia_id
attribute	Aphia_id	units	String	unitless
variable	Genbank_accession		String
attribute	Genbank_accession	long_name	String	Genbank_accession
attribute	Genbank_accession	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.