ERDDAP > info > bcodmo_dataset_997637_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data			files	public	[Alteromonas MIT1002 EV Transcriptome] - NCBI accession metadata for transcriptomic expression sequences from cultures of Alteromonas macleodii MIT1002 grown with bacterial extracellular vesicles as a carbon source (Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption)		M	background			BCO-DMO	bcodmo_dataset_997637_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.997637.1
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/997637
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	summary	String	To examine how marine bacteria utilize extracellular vesicles as a nutrient source, we compared the transcriptomic response of Alteromonas macleodii MIT1002 cells grown on purified extracellular vesicles (purified from Alteromonas MIT1002 or Prochlorococcus MIT9312) as compared to glucose or a no-carbon control. Our study provides insights into the cellular mechanisms through which these cells may take up extracellular vesicle material and the specific types of molecules within vesicles that can be utilized for carbon and/or energy. This dataset contains accession metadata for sequences run from cultures of Alteromonas macleodii MIT1002. Data were collected by Dr. Ashley Stein and Dr. Steven Biller, Wellesley College. The raw RNAseq reads have been deposited in the National Center for Biotechnology Information (NCBI) GEO database under accession GSE314643.
attribute	NC_GLOBAL	title	String	[Alteromonas MIT1002 EV Transcriptome] - NCBI accession metadata for transcriptomic expression sequences from cultures of Alteromonas macleodii MIT1002 grown with bacterial extracellular vesicles as a carbon source (Collaborative Research: Quantifying the role of microbial extracellular vesicles in marine dissolved organic matter production and consumption)
variable	Biosample_ID		String
attribute	Biosample_ID	long_name	String	Biosample_id
attribute	Biosample_ID	units	String	unitless
variable	SRA_Experiment_ID		String
attribute	SRA_Experiment_ID	long_name	String	Sra_experiment_id
attribute	SRA_Experiment_ID	units	String	unitless
variable	GEO_Sample_ID		String
attribute	GEO_Sample_ID	long_name	String	Geo_sample_id
attribute	GEO_Sample_ID	units	String	unitless
variable	Bacterium		String
attribute	Bacterium	long_name	String	Bacterium
attribute	Bacterium	units	String	unitless
variable	Carbon_Substrate		String
attribute	Carbon_Substrate	long_name	String	Carbon_substrate
attribute	Carbon_Substrate	units	String	unitless
variable	Timepoint		String
attribute	Timepoint	long_name	String	Timepoint
attribute	Timepoint	units	String	unitless
variable	Replicate		int
attribute	Replicate	actual_range	int	1, 3
attribute	Replicate	long_name	String	Replicate
attribute	Replicate	units	String	unitless

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.