ERDDAP > info > bcodmo_dataset_998771_v1

Grid DAP Data	Sub- set	Table DAP Data	Make A Graph	W M S	Source Data Files	Acces- sible	Title	Sum- mary	FGDC, ISO, Metadata	Back- ground Info	RSS	E mail	Institution	Dataset ID
		data	graph		files	public	[Metagenome from the Pacific Ocean OMZ] - Sample information and accession numbers for metagenome samples collected in the Eastern Tropical Pacific Oxygen Minimum Zone on R/V Sally Ride cruise SR2114 during December 2021 to January 2022 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)		F   I   M	background			BCO-DMO	bcodmo_dataset_998771_v1

The Dataset's Variables and Attributes

Row Type	Variable Name	Attribute Name	Data Type	Value
attribute	NC_GLOBAL	cdm_data_type	String	Other
attribute	NC_GLOBAL	Conventions	String	COARDS, CF-1.6, ACDD-1.3
attribute	NC_GLOBAL	creator_email	String	info at bco-dmo.org
attribute	NC_GLOBAL	creator_name	String	BCO-DMO
attribute	NC_GLOBAL	creator_url	String	https://www.bco-dmo.org/
attribute	NC_GLOBAL	doi	String	10.26008/1912/bco-dmo.998771.1
attribute	NC_GLOBAL	Easternmost_Easting	double	-90.4497
attribute	NC_GLOBAL	geospatial_lat_max	double	16.9798
attribute	NC_GLOBAL	geospatial_lat_min	double	11.8122
attribute	NC_GLOBAL	geospatial_lat_units	String	degrees_north
attribute	NC_GLOBAL	geospatial_lon_max	double	-90.4497
attribute	NC_GLOBAL	geospatial_lon_min	double	-107.7
attribute	NC_GLOBAL	geospatial_lon_units	String	degrees_east
attribute	NC_GLOBAL	geospatial_vertical_max	double	601.1
attribute	NC_GLOBAL	geospatial_vertical_min	double	112.0
attribute	NC_GLOBAL	geospatial_vertical_positive	String	down
attribute	NC_GLOBAL	geospatial_vertical_units	String	m
attribute	NC_GLOBAL	infoUrl	String	https://osprey.bco-dmo.org/dataset/998771
attribute	NC_GLOBAL	institution	String	BCO-DMO
attribute	NC_GLOBAL	license	String	The data may be used and redistributed for free but is not intended for legal use, since it may contain inaccuracies. Neither the data Contributor, ERD, NOAA, nor the United States Government, nor any of their employees or contractors, makes any warranty, express or implied, including warranties of merchantability and fitness for a particular purpose, or assumes any legal liability for the accuracy, completeness, or usefulness, of this information.
attribute	NC_GLOBAL	Northernmost_Northing	double	16.9798
attribute	NC_GLOBAL	sourceUrl	String	(local files)
attribute	NC_GLOBAL	Southernmost_Northing	double	11.8122
attribute	NC_GLOBAL	summary	String	This dataset represents the shotgun metagenome samples used in used in Zhao et al., ISME J 2025. Samples for metagenomic sequencing were collected from the oxygen minimum zone in the Eastern Tropical Pacific Ocean during the R/V Sally Ride (SR2114) cruise, December 2021 – January 2022. Sea water was collected from all nine depths for all five sampling stations reported in the Zhao et al., paper (See Table for details). Collections were made using Niskin bottles on a rosette containing a conductivity–temperature–depth profiler (Sea-Bird SBE 911plus). DNA was extracted from biomass on collecting filters using the MoBio Power Soil kit (MoBio Inc. Carlsbad, CA, USA) and libraries were prepared for metagenomic sequencing using the Illumina DNA library prep kit with unique dual indexing according to manufacturer's instructions, except that the protocol was terminated after isolation of cleaned double stranded libraries. An equimolar mixture of the libraries was sequenced on an Illumina NovaSeq 6000 instrument at the Molecular Evolution Core, Georgia Institute of Technology. The shotgun metagenomes are available in the National Center for Biotechnology Information (NCBI) under BioProject number PRJNA1124864.
attribute	NC_GLOBAL	title	String	[Metagenome from the Pacific Ocean OMZ] - Sample information and accession numbers for metagenome samples collected in the Eastern Tropical Pacific Oxygen Minimum Zone on R/V Sally Ride cruise SR2114 during December 2021 to January 2022 (Collaborative Research: Microdiversity drives ecosystem function: SAR11 bacteria as models for oceanic nitrogen loss)
attribute	NC_GLOBAL	Westernmost_Easting	double	-107.7
variable	Sample_ID		String
attribute	Sample_ID	long_name	String	Sample_id
attribute	Sample_ID	units	String	unitless
variable	DNA_Concentration		float
attribute	DNA_Concentration	actual_range	float	2.3, 13.0
attribute	DNA_Concentration	long_name	String	Dna_concentration
attribute	DNA_Concentration	units	String	micromoles per liter
variable	Date_Sampled		String
attribute	Date_Sampled	long_name	String	Date_sampled
attribute	Date_Sampled	units	String	unitless
variable	Date_Extracted		String
attribute	Date_Extracted	long_name	String	Date_extracted
attribute	Date_Extracted	units	String	unitless
variable	latitude		float
attribute	latitude	_CoordinateAxisType	String	Lat
attribute	latitude	actual_range	float	11.8122, 16.9798
attribute	latitude	axis	String	Y
attribute	latitude	ioos_category	String	Location
attribute	latitude	long_name	String	Latitude
attribute	latitude	standard_name	String	latitude
attribute	latitude	units	String	degrees_north
variable	longitude		float
attribute	longitude	_CoordinateAxisType	String	Lon
attribute	longitude	actual_range	float	-107.7, -90.4497
attribute	longitude	axis	String	X
attribute	longitude	ioos_category	String	Location
attribute	longitude	long_name	String	Longitude
attribute	longitude	standard_name	String	longitude
attribute	longitude	units	String	degrees_east
variable	depth		float
attribute	depth	_CoordinateAxisType	String	Height
attribute	depth	_CoordinateZisPositive	String	down
attribute	depth	actual_range	float	112.0, 601.1
attribute	depth	axis	String	Z
attribute	depth	ioos_category	String	Location
attribute	depth	long_name	String	Depth
attribute	depth	positive	String	down
attribute	depth	standard_name	String	depth
attribute	depth	units	String	m
variable	Volume_Filtered		int
attribute	Volume_Filtered	actual_range	int	1820, 2600
attribute	Volume_Filtered	long_name	String	Volume_filtered
attribute	Volume_Filtered	units	String	milliliters (mL)
variable	Station		int
attribute	Station	actual_range	int	20, 45
attribute	Station	long_name	String	Station
attribute	Station	units	String	unitless
variable	Oxygen_Concentration		float
attribute	Oxygen_Concentration	actual_range	float	0.01, 12.17
attribute	Oxygen_Concentration	long_name	String	Oxygen_concentration
attribute	Oxygen_Concentration	units	String	micromoles per kilogram
variable	Experiment_Accession		String
attribute	Experiment_Accession	long_name	String	Experiment_accession
attribute	Experiment_Accession	units	String	unitless
variable	Instrument		String
attribute	Instrument	long_name	String	Instrument
attribute	Instrument	units	String	unitless
variable	Study_Accession		String
attribute	Study_Accession	long_name	String	Study_accession
attribute	Study_Accession	units	String	unitless
variable	Sample_Accession		String
attribute	Sample_Accession	long_name	String	Sample_accession
attribute	Sample_Accession	units	String	unitless
variable	Bioproejct_number		String
attribute	Bioproejct_number	long_name	String	Bioproejct_number
attribute	Bioproejct_number	units	String	unitless
variable	Total_Bases		int
attribute	Total_Bases	long_name	String	Total_bases
attribute	Total_Bases	units	String	number of bases
variable	Library_Name		String
attribute	Library_Name	long_name	String	Library_name
attribute	Library_Name	units	String	Matches Sample ID above plus another unique identifier.

The information in the table above is also available in other file formats (.csv, .htmlTable, .itx, .json, .jsonlCSV1, .jsonlCSV, .jsonlKVP, .mat, .nc, .nccsv, .tsv, .xhtml) via a RESTful web service.