ERDDAP > tabledap > Make A Graph

Dataset Title:	[Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes)
Institution:	BCO-DMO   (Dataset ID: bcodmo_dataset_911008_v1)
Range:	longitude = -83.45596 to -83.32453°E
Information:	Summary | License | Metadata | Background | Data Access Form | Files

 

Graph Type:  lines linesAndMarkers markers sticks X Axis:  Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L Y Axis:  Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L Color:  Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L   Constraints Optional Constraint #1 Optional Constraint #2 NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L     != =~ <= >= = < >     != =~ <= >= = < > NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L     != =~ <= >= = < >     != =~ <= >= = < > NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L     != =~ <= >= = < >     != =~ <= >= = < > NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L     != =~ <= >= = < >     != =~ <= >= = < > NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L     != =~ <= >= = < >     != =~ <= >= = < >   Server-side Functions  distinct() orderBy orderByDescending orderByClosest orderByCount orderByLimit orderByMax orderByMin orderByMinMax orderByMean orderBySum (" NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L NCBI_Accession Culture_ID Genus Species Variety Collection_ID Media Collection_Date Location Sample_Type Lat longitude Temp Cond TDS pH ORP NTU ODO ODO_mg_L Cl_mg_L SO4_mg_L NO3_N_mg_L Si_mg_L SRP_P_mg_L ")   Graph Settings Marker Type:  None Plus X Dot Square Filled Square Circle Filled Circle Up Triangle Filled Up Triangle Borderless Filled Square Borderless Filled Circle Borderless Filled Up Triangle  Size:  3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 Color:  Color Bar:  BlackBlueWhite BlackGreenWhite BlackRedWhite BlackWhite BlueWhiteRed BlueWideWhiteRed LightRainbow Ocean OceanDepth Rainbow Rainbow2 Rainfall ReverseRainbow RedWhiteBlue RedWhiteBlue2 RedWideWhiteBlue Spectrum Topography TopographyDepth WhiteBlueBlack WhiteGreenBlack WhiteRedBlack WhiteBlack YellowRed KT_algae KT_amp KT_balance KT_curl KT_deep KT_delta KT_dense KT_gray KT_haline KT_ice KT_matter KT_oxy KT_phase KT_solar KT_speed KT_tempo KT_thermal KT_turbid  Continuity:  Continuous Discrete  Scale:  Linear Log    Minimum:   Maximum:   N Sections:  2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 Y Axis Minimum:   Maximum:    Ascending Descending Linear Log   Redraw the Graph (Please be patient. It may take a while to get the data.)   Optional: Then set the File Type: .asc .csv .csvp .csv0 .dataTable .das .dds .dods .esriCsv .fgdc .geoJson .graph .help .html .htmlTable .iso19115 .itx .json .jsonlCSV1 .jsonlCSV .jsonlKVP .mat .nc .ncHeader .ncCF .ncCFHeader .ncCFMA .ncCFMAHeader .nccsv .nccsvMetadata .ncoJson .odvTxt .subset .tsv .tsvp .tsv0 .wav .xhtml .kml .smallPdf .pdf .largePdf .smallPng .png .largePng .transparentPng (File Type information) and or view the URL: (Documentation / Bypass this form )

 

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Things You Can Do With Your Graphs

Well, you can do anything you want with your graphs, of course. But some things you might not have considered are:

• Web page authors can embed a graph of the latest data in a web page using HTML <img> tags.
• Anyone can use ERDDAPs Slide Sorter to build a personal web page that displays graphs with the latest data (or other images or HTML content), each in its own, draggable slide.
   

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  NCBI_Accession {
    String long_name "Ncbi_accession";
    String units "unitless";
  }
  Culture_ID {
    String long_name "Culture_id";
    String units "unitless";
  }
  Genus {
    String long_name "Genus";
    String units "unitless";
  }
  Species {
    String long_name "Species";
    String units "unitless";
  }
  Variety {
    String long_name "Variety";
    String units "unitless";
  }
  Collection_ID {
    String long_name "Collection_id";
    String units "unitless";
  }
  Media {
    String long_name "Media";
    String units "unitless";
  }
  Collection_Date {
    String long_name "Collection_date";
    String units "Month/Day/Year";
  }
  Location {
    String long_name "Location";
    String units "unitless";
  }
  Sample_Type {
    String long_name "Sample_type";
    String units "unitless";
  }
  Lat {
    Float32 actual_range 41.76795, 45.19839;
    String long_name "Lat";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -83.45596, -83.32453;
    String axis "X";
    String ioos_category "Location";
    String long_name "Long";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Temp {
    Float32 actual_range 9.92, 14.36;
    String long_name "Temp";
    String units "Celsius (°C)";
  }
  Cond {
    Int32 actual_range 2234, 2607;
    String long_name "Cond";
    String units "Microsiemens / centimeter (μS/cm)";
  }
  TDS {
    Float32 actual_range 1.451, 1.689;
    String long_name "Tds";
    String units "Grams/liter (g/L)";
  }
  pH {
    Float32 actual_range 7.04, 7.56;
    String long_name "Ph";
    String units "unitless";
  }
  ORP {
    Float32 actual_range -203.2, 89.0;
    String long_name "Orp";
    String units "Millivolts (mV)";
  }
  NTU {
    Float32 actual_range -0.2, 5.0;
    String long_name "Ntu";
    String units "Nephelometric Turbidity Units (NTU)";
  }
  ODO {
    Float32 actual_range 6.2, 57.5;
    String long_name "Odo";
    String units "Percentage saturation";
  }
  ODO_mg_L {
    Float32 actual_range 0.69, 6.18;
    String long_name "Odo_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  Cl_mg_L {
    Int32 actual_range 35, 79;
    String long_name "Cl_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  SO4_mg_L {
    Int32 actual_range 803, 1327;
    String long_name "So4_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  NO3_N_mg_L {
    Float32 actual_range 0.51, 0.51;
    String long_name "No3_n_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  Si_mg_L {
    Float32 actual_range 8.87, 11.8;
    String long_name "Si_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  SRP_P_mg_L {
    String long_name "Srp_p_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.911008.1";
    Float64 Easternmost_Easting -83.32453;
    Float64 geospatial_lon_max -83.32453;
    Float64 geospatial_lon_min -83.45596;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-11-08T06:04:41Z (local files)
2024-11-08T06:04:41Z https://erddap.bco-dmo.org/tabledap/bcodmo_dataset_911008_v1.das";
    String infoUrl "https://www.bco-dmo.org/dataset/911008";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.
Each of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.";
    String title "[Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes)";
    Float64 Westernmost_Easting -83.45596;
  }
}

 

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Using tabledap to Request Data and Graphs from Tabular Datasets

tabledap lets you request a data subset, a graph, or a map from a tabular dataset (for example, buoy data), via a specially formed URL. tabledap uses the OPeNDAP Data Access Protocol (DAP) and its selection constraints.

The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.

• (easy) You can get data by using the dataset's Data Access Form or Subset form. They make the URL for you.
• (easy) You can make a graph or map by using the dataset's Make A Graph form. It makes the URL for you.
• (not hard) You can bypass the forms and get the data or make a graph or map by generating the URL by hand or with a computer program or script.

Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names, followed by a collection of constraints (e.g., variable<value), each preceded by '&' (which is interpreted as "AND").

For details, see the tabledap Documentation.

 

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