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Dataset Title:  [Diatom cultures used to generate DNA reference library] - Diatom cultures
used to generate DNA reference library from samples collected from sites in
Alpena, Michigan and Palm Coast, Florida between July 2021 &
2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World:
Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s
sinkholes)
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Institution:  BCO-DMO   (Dataset ID: bcodmo_dataset_911008_v1)
Information:  Summary ? | License ? | Metadata | Background (external link) | Files | Make a graph
 
Variable ?   Optional
Constraint #1 ?
Optional
Constraint #2 ?
   Minimum ?
 
   Maximum ?
 
 NCBI_Accession (unitless) ?          "OR455849"    "OR455891"
 Culture_ID (unitless) ?          "49B5"    "94C5"
 Genus (unitless) ?          "Craticula"    "Stephanocyclus"
 Species (unitless) ?          "affinis"    "viridis"
 Variety (unitless) ?          "debilis"    "rumrichae"
 Collection_ID (unitless) ?          "SH120"    "SH205"
 Media (unitless) ?          "WC + Si"    "WC + Si"
 Collection_Date (Month/Day/Year) ?          "2021-07-20"    "2022-07-03"
 Location (unitless) ?          "Alpena Fountain"    "Middle Island Sink..."
 Sample_Type (unitless) ?          "Benthic Biofilm"    "Benthic Biofilm"
 Lat (degrees_north) ?          41.76795    45.19839
 longitude (Long, degrees_east) ?          -83.45596    -83.32453
  < slider >
 Temp (Celsius (°C)) ?          9.92    14.36
 Cond (Microsiemens / centimeter (μS/cm)) ?          2234    2607
 TDS (Grams/liter (g/L)) ?          1.451    1.689
 pH (unitless) ?          7.04    7.56
 ORP (Millivolts (mV)) ?          -203.2    89.0
 NTU (Nephelometric Turbidity Units (NTU)) ?          -0.2    5.0
 ODO (Percentage saturation) ?          6.2    57.5
 ODO_mg_L (Milligrams/liter (mg/L)) ?          0.69    6.18
 Cl_mg_L (Milligrams/liter (mg/L)) ?          35    79
 SO4_mg_L (Milligrams/liter (mg/L)) ?          803    1327
 NO3_N_mg_L (Milligrams/liter (mg/L)) ?          0.51    0.51
 Si_mg_L (Milligrams/liter (mg/L)) ?          8.87    11.8
 SRP_P_mg_L (Milligrams/liter (mg/L)) ?              
 
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File type: (more information)

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The Dataset Attribute Structure (.das) for this Dataset

Attributes {
 s {
  NCBI_Accession {
    String long_name "Ncbi_accession";
    String units "unitless";
  }
  Culture_ID {
    String long_name "Culture_id";
    String units "unitless";
  }
  Genus {
    String long_name "Genus";
    String units "unitless";
  }
  Species {
    String long_name "Species";
    String units "unitless";
  }
  Variety {
    String long_name "Variety";
    String units "unitless";
  }
  Collection_ID {
    String long_name "Collection_id";
    String units "unitless";
  }
  Media {
    String long_name "Media";
    String units "unitless";
  }
  Collection_Date {
    String long_name "Collection_date";
    String units "Month/Day/Year";
  }
  Location {
    String long_name "Location";
    String units "unitless";
  }
  Sample_Type {
    String long_name "Sample_type";
    String units "unitless";
  }
  Lat {
    Float32 actual_range 41.76795, 45.19839;
    String long_name "Lat";
    String units "degrees_north";
  }
  longitude {
    String _CoordinateAxisType "Lon";
    Float32 actual_range -83.45596, -83.32453;
    String axis "X";
    String ioos_category "Location";
    String long_name "Long";
    String standard_name "longitude";
    String units "degrees_east";
  }
  Temp {
    Float32 actual_range 9.92, 14.36;
    String long_name "Temp";
    String units "Celsius (°C)";
  }
  Cond {
    Int32 actual_range 2234, 2607;
    String long_name "Cond";
    String units "Microsiemens / centimeter (μS/cm)";
  }
  TDS {
    Float32 actual_range 1.451, 1.689;
    String long_name "Tds";
    String units "Grams/liter (g/L)";
  }
  pH {
    Float32 actual_range 7.04, 7.56;
    String long_name "Ph";
    String units "unitless";
  }
  ORP {
    Float32 actual_range -203.2, 89.0;
    String long_name "Orp";
    String units "Millivolts (mV)";
  }
  NTU {
    Float32 actual_range -0.2, 5.0;
    String long_name "Ntu";
    String units "Nephelometric Turbidity Units (NTU)";
  }
  ODO {
    Float32 actual_range 6.2, 57.5;
    String long_name "Odo";
    String units "Percentage saturation";
  }
  ODO_mg_L {
    Float32 actual_range 0.69, 6.18;
    String long_name "Odo_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  Cl_mg_L {
    Int32 actual_range 35, 79;
    String long_name "Cl_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  SO4_mg_L {
    Int32 actual_range 803, 1327;
    String long_name "So4_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  NO3_N_mg_L {
    Float32 actual_range 0.51, 0.51;
    String long_name "No3_n_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  Si_mg_L {
    Float32 actual_range 8.87, 11.8;
    String long_name "Si_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
  SRP_P_mg_L {
    String long_name "Srp_p_mg_l";
    String units "Milligrams/liter (mg/L)";
  }
 }
  NC_GLOBAL {
    String cdm_data_type "Other";
    String Conventions "COARDS, CF-1.6, ACDD-1.3";
    String creator_email "info@bco-dmo.org";
    String creator_name "BCO-DMO";
    String creator_url "https://www.bco-dmo.org/";
    String doi "10.26008/1912/bco-dmo.911008.1";
    Float64 Easternmost_Easting -83.32453;
    Float64 geospatial_lon_max -83.32453;
    Float64 geospatial_lon_min -83.45596;
    String geospatial_lon_units "degrees_east";
    String history 
"2024-11-21T08:47:07Z (local files)
2024-11-21T08:47:07Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_911008_v1.html";
    String infoUrl "https://www.bco-dmo.org/dataset/911008";
    String institution "BCO-DMO";
    String license 
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
    String sourceUrl "(local files)";
    String summary 
"These data are the information for each of the cultures generated from samples collected from three sites in Alpena, Michigan, one site in Monroe, Michigan, and one site in Palm Coast, Florida. Data are for cultures sequenced using Sanger sequencing and include taxonomic identification, location and water parameter information from samples used to develop the cultures, and growth medium.
Each of these cultures was developed from high-sulfur, low-oxygen environments formed by underwater sinkholes and springs that create extreme habitats populated by microbial mat communities. Our study investigated previously undescribed diatom diversity in these habitats. Sequences from these cultures contribute to tying molecular data to morphologically identified isolates, providing a bridge between these two data types that can be used to improve metabarcoding analyses.";
    String title "[Diatom cultures used to generate DNA reference library] - Diatom cultures used to generate DNA reference library from samples collected from sites in Alpena, Michigan and Palm Coast, Florida between July 2021 & 2022. (Collaborative Research: RUI: OCE-BO: Tango in the Mat World: Biogeochemistry of diurnal vertical migration in microbial mats of Lake Huron’s sinkholes)";
    Float64 Westernmost_Easting -83.45596;
  }
}

 

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For example,
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