Accessing BCO-DMO data
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BCO-DMO ERDDAP
Accessing BCO-DMO data |
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| Dataset Title: | [16S microbiome data for artificial reef sponges and seawater] - 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 (Collaborative Research: Investigations into microbially mediated ecological diversification in sponges) 
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| Institution: | BCO-DMO (Dataset ID: bcodmo_dataset_953999_v1) |
| Information: | Summary
| License
| FGDC
| ISO 19115
| Metadata
| Background
| Files
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Attributes {
s {
collection_date {
String long_name "Collection_date";
String units "unitless";
}
latitude {
String _CoordinateAxisType "Lat";
Float32 actual_range 24.56779, 24.56779;
String axis "Y";
String ioos_category "Location";
String long_name "Latitude";
String standard_name "latitude";
String units "degrees_north";
}
longitude {
String _CoordinateAxisType "Lon";
Float32 actual_range -81.39122, -81.39122;
String axis "X";
String ioos_category "Location";
String long_name "Longitude";
String standard_name "longitude";
String units "degrees_east";
}
accession {
String long_name "Accession";
String units "unitless";
}
sample_name {
String long_name "Sample_name";
String units "unitless";
}
species_ab {
String long_name "Species_ab";
String units "unitless";
}
sample_type {
String long_name "Sample_type";
String units "unitless";
}
organism {
String long_name "Organism";
String units "unitless";
}
AphiaID {
String long_name "Aphiaid";
String units "unitless";
}
LSID {
String long_name "Lsid";
String units "unitless";
}
isolation_source {
String long_name "Isolation_source";
String units "unitless";
}
geo_loc_name {
String long_name "Geo_loc_name";
String units "unitless";
}
data_day {
Int32 actual_range 0, 6;
String long_name "Data_day";
String units "days";
}
seq_attempt {
String long_name "Seq_attempt";
String units "unitless";
}
}
NC_GLOBAL {
String cdm_data_type "Other";
String Conventions "COARDS, CF-1.6, ACDD-1.3";
String creator_email "info@bco-dmo.org";
String creator_name "BCO-DMO";
String creator_url "https://www.bco-dmo.org/";
String doi "10.26008/1912/bco-dmo.953999.1";
Float64 Easternmost_Easting -81.39122;
Float64 geospatial_lat_max 24.56779;
Float64 geospatial_lat_min 24.56779;
String geospatial_lat_units "degrees_north";
Float64 geospatial_lon_max -81.39122;
Float64 geospatial_lon_min -81.39122;
String geospatial_lon_units "degrees_east";
String history
"2025-08-02T17:37:49Z (local files)
2025-08-02T17:37:49Z https://erddap.bco-dmo.org/erddap/tabledap/bcodmo_dataset_953999_v1.html";
String infoUrl "https://www.bco-dmo.org/dataset/953999";
String institution "BCO-DMO";
String license
"The data may be used and redistributed for free but is not intended
for legal use, since it may contain inaccuracies. Neither the data
Contributor, ERD, NOAA, nor the United States Government, nor any
of their employees or contractors, makes any warranty, express or
implied, including warranties of merchantability and fitness for a
particular purpose, or assumes any legal liability for the accuracy,
completeness, or usefulness, of this information.";
Float64 Northernmost_Northing 24.56779;
String sourceUrl "(local files)";
Float64 Southernmost_Northing 24.56779;
String summary
"Sponges are a dominant component of coral reefs worldwide and in the Caribbean, where their biomass exceeds that of reef-building corals. For almost a quarter century, the success of sponges in the Caribbean has been linked to their filter-feeding ability. However, recent work demonstrated that coexisting sponges on Caribbean reefs host unique communities of bacteria that might allow sponges to access multiple pools of nutrients that are not available to other organisms. In this project, the investigators will test the hypothesis that ecologically dominant sponge species in the Caribbean have unique metabolic strategies that are mediated by their associations with microbes that live within the sponge body.
In this dataset, we present the 16S rRNA microbiome NCBI accession and sample collection metadata for an artificial reef experiment where sponges of 10 species were placed on this temporary reef from April to August of 2021 and sampled using VacuSIP. VacuSIP methods capture incurrent (In) and excurrent (Ex) water from each sponge specimen. Incurrent represents the bacteria that are available for the sponge to consume via filter feeding and excurrent represents the bacteria that remain once sponges have consumed their preferred taxa. Additionally, we have provided microbiome metadata for the host sponges for several of these paired In/Ex samples. See the related dataset, NCBI Bioproject PRJNA1179970, for all sequence data. Microbiome data was generated using protocols from the Earth Microbiome project and sequencing was conducted on an Illumina MiSeq at Middle Tennessee State University. The data available at NCBI represents raw sequencing data, and no quality checks or sequencing filtering has been done on the uploaded sequences.";
String title "[16S microbiome data for artificial reef sponges and seawater] - 16S microbiome metadata collected from shallow artificial reef sponges and seawater in the Florida Keys, USA from Apr 2021 to Aug 2021 (Collaborative Research: Investigations into microbially mediated ecological diversification in sponges)";
Float64 Westernmost_Easting -81.39122;
}
}
Data Access Protocol (DAP) and its
selection constraints.
The URL specifies what you want: the dataset, a description of the graph or the subset of the data, and the file type for the response.
Tabledap request URLs must be in the form
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/datasetID.fileType{?query}
For example,
https://coastwatch.pfeg.noaa.gov/erddap/tabledap/pmelTaoDySst.htmlTable?longitude,latitude,time,station,wmo_platform_code,T_25&time>=2015-05-23T12:00:00Z&time<=2015-05-31T12:00:00Z
Thus, the query is often a comma-separated list of desired variable names,
followed by a collection of
constraints (e.g., variable<value),
each preceded by '&' (which is interpreted as "AND").
For details, see the tabledap Documentation.